Great!
Thanks SO much.
Kindly,
Ludovica
On Nov 3, 2021, at 20:43, Adam Martersteck <acmar...@gmail.com> wrote:
External Email - Use Caution
PETsurfer wasn't released until the v6.0.0 stable build. You can see it in the
release notes here: MailScanner has detected a possible fraud attempt from
"secure-web.cisco.com" claiming to be
https://surfer.nmr.mgh.harvard.edu/fswiki/ReleaseNotes<https://secure-web.cisco.com/1n9uot8CDL1X4zb4xQXVdkvdqbv2ngmmjy0xI-YpaJo1tCft8AUJ0fOq2tnIi9H-neObzRYbNnzQ_f-6Te5NpdO_gdoIcUF7wBpGrIgl62EZEaig2VymVFjCNARkni1wUTJ13czIyMTklgwK4iZYXxPXCi62hXdypysMt1AovGhIBjCBbxwxARFiBo7UK4yxCu_DkX3qIclp985He7UPMP41zXb2euSPBiCtR_UvI2e1n30GWDH8BltpJ7syxjN2U7Gvsjo_ROof_krSJUUDh2A/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FReleaseNotes>
I'd suggest downloading the newest release which will have the most updated
code.
You should be able to run PETsurfer from FS builds v6.0, v7.1, v7.2+ (gtmseg,
mri_gtmpvc, etc.) on v5.3.0 reconstructions. (Note: it's often recommended for
reproducibility sake to use the same version of FS if you can spare the compute
time).
On Wed, Nov 3, 2021 at 8:07 AM Brusaferri, Ludovica
<lbrusafe...@mgh.harvard.edu<mailto:lbrusafe...@mgh.harvard.edu>> wrote:
Hi!
Thanks a lot. I have freesurfer 5.3.0 installed. If I type on the terminal
commands such as tkregister it works , but if I try PETsurfer commands I have
errors such as "mri_gtmpvc: Command not found”.
Any idea?
Thank you,
Ludovica
On Nov 3, 2021, at 10:05, Douglas N. Greve
<dgr...@mgh.harvard.edu<mailto:dgr...@mgh.harvard.edu>> wrote:
There is nothing special you have to do. What version of FS do you have? You
still have to source the FS environment. If you can run recon-all, you should
be able to run PETsurfer
On 11/1/2021 12:26 PM, Brusaferri, Ludovica wrote:
Hi!
I have been using freesurfer regularly and I am now trying to implement a few
commands from PETsurfer MailScanner has detected a possible fraud attempt from
"secure-web.cisco.com" claiming to be
https://surfer.nmr.mgh.harvard.edu/fswiki/PetSurfer<https://secure-web.cisco.com/1BqgJn5GtD8lBmMhFIdkypD8JUZh4G9z6XnAbXLEtWVfk5ajdnK2tMbsx-SPWVIKjr-pvrXHZkfmuy822Z5VxuFrJPxx1uk4mN5QrGBjkWDzSIIb2mqQM8GVyIgapEgf8nTKrJooRayERS_AT_qr18crszq0A-mVtb3-oyYRRpGnUWMHEYJ0c9HDY4jv0xzEi3hUz7v4hsPpfk4MreO51RBUg69F_vA1eLD3NJOnCWDMFQBWsa9ugagsp6DyfQmNDEP2oIcThnq9fsmkqvQt6zw/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FPetSurfer>.
It seems like I cannot use any of the commands listed in the wiki (such as
gtmseg or mri_coreg), although they should be part of the freesurfer package
(as PETsurfer is part of freesurfer). Do I need to follow a specific pipeline
to install the PETsurfer extension? If so, could you please guide me through?
Thanks so much in advance!
Kindly,
Ludovica
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