Did you see this response from a few days ago?
On 10/27/2021 11:26 AM, Douglas N. Greve wrote:
I'm not sure what you did or how to interpret that pic. If I
understand, you ran a case through recon-all and created labels on
that case. You then recon-all again using a totally different output
where you improved the homogeneity. You now want to map the labels you
created on the 1st run to the 2nd run. Is that right?
On 10/22/2021 4:58 PM, Trisanna Sprung-Much wrote:
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Hi there
I created labels on surfaces of subjects (chimp) registered to a
particular volumetric template. The labels were created on the
surfaces in Freeview using Freesurfer 7.1.
Since creating these labels, I improved the intensity inhomogeneity
in the scans and re-ran the surfaces. When I try to use
mri_label2label to transpose the labels to the new surfaces of each
subject, the labels do not fall exactly where they should. *In fact,
the surfaces themselves have a slight translation in them (see
snapshot).* I assume this is because my registration to the template
that I did prior to running recon-all is differing somehow between
the 2 groups. *However, I thought that this should not matter since
mri_label2label --regmethod surface is using the sphere.reg to
fsaverage. *
I am wondering if there is anything I can do to improve
mri_label2label to avoid editing the labels manually?
Thank you for your time,
Trisanna
--
/Trisanna Sprung-Much, PhD/
/Research Associate/
/McGill University
/
/Montreal Neurological Institute/
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