[Freesurfer] TRACULA trac-all cores/threads

trac-all (TRACULA) seems to use multiple threads/cores. Is there a way to either (a) limit the number, or (b) determine how many it will use, so it can behave appropriately in a cluster? -- Daniel M. Drucker, Ph.D. Director of IT McLean Hospital Imaging Center Harvard Medical School ___

[Freesurfer] Open Position: Postdoc or PhD Student for Deep Learning based Lesion Recognition in human MRI

External Email - Use Caution *Postdoc or PhD Student for Deep Learning based Lesion Recognition in human MRI* available from July 1st, 2021, or later. The position will be embedded in a three-year project within the Human Centered AI Network (HUMAINE) at Ruhr-University Bochum (RU

Re: [Freesurfer] Finding equivalent vertices on fsaverage_sym lh and rh surfaces

External Email - Use Caution Hi Tim, I think this is possible with mris_left_right_register, e.g. mris_left_right_register -dist 1 lh.sphere rh.sphere lh.sphere.d1.left_right rh.sphere.d1.left_right -Paul On Fri, Jun 11, 2021 at 10:02 AM Tim Schäfer wrote: > External

Re: [Freesurfer] how to visualize statistical maps in FS7.1?

External Email - Use Caution dear all even though on the official webpage it is advised to use freeview to display statistical maps because tksurfer is considered obsolete/not maintained in freesurfer 7, I am unable to reproduce the same figures, even when using tksurferfv. on

[Freesurfer] Issues with recon-all hanging

External Email - Use Caution Hello, I have been collecting data on a 7T scanner, with functional EPI data collected with 1.5mm voxels, and I have been having an issue with some of our data where recon-all just hangs after producing only a small amount of outputs. For instance,

Re: [Freesurfer] memory allocation error

External Email - Use Caution dear all, is there any progress on this issue? can I send more information to help with debugging? judging from the other entries of the mailing list this is not an issue that concerns only me. thank you for your attention, bests fabio Dr. Fabio

[Freesurfer] Finding equivalent vertices on fsaverage_sym lh and rh surfaces

External Email - Use Caution Dear FreeSurfer experts, for the 'fsaverage_sym' template that comes with FreeSurfer, I would like to find a mapping between equivalent vertices (i.e., vertices in the same anatomical position) between the left and right hemispheres. By "equivalent"

Re: [Freesurfer] T1 hippocampal subfields exited with ERRORS

Dear Josephine, This is unusual. Could it be possible that you are running out of RAM memory? Do you have 16GB or more available? Cheers, /Eugenio On 11 Jun 2021, at 01:39, 林鈺庭 mailto:ytlin...@g.ntu.edu.tw>> wrote: External Email - Use Caution Dear Developer and Eugenio, We encounter

Re: [Freesurfer] Hippocampal Subfields error "no such file or directory"/"dyld library not loaded"

Thanks, Chester, that looks good. Am I safely assuming that the Matlab runtime has been installed? Cheers, /Eugenio > On 10 Jun 2021, at 21:31, Chester Kang wrote: > >External Email - Use Caution > > Hi Eugenio, > > The command that was run is segmentHA_T1.sh. > > I've rerun

[Freesurfer] Problem with rca-config when running recon-all

External Email - Use Caution Dear Freesurfer team, I am new to Freesurfer. I installed it on my WSL (ubuntu 18.04) following the instructions at: https://secure-web.cisco.com/19NPylFTZm62HJK1A_0s-94uhHZebqqpw9Sitxzpx_bTWotvZkXBlcvKWyOUSXTB6paCe4qC2IKZQ4CWTUhQ1G0BvGwI6KzDF5Fe4

[Freesurfer] a query on gray volume from parcellating data

External Email - Use Caution Dear Sir/Madam, Could you please tell what does it mean by 'Gray volume' and 'avg thickness' of various structures while we are parcellating cortical surfaces through FreeSurfer and getting 'aparcstats2table'. Thank you for your help. Regards, KC [