Re: [Freesurfer] Issue with Segmentation

Hi Katie Can you give us more info? What command line did you run? Can you send us the recon-all.log file from the subject so we can see what step it is on? Usually this means the topology fixer is trying to fix something giant, like the cerebellum attached to cortex or skull left around or som

[Freesurfer] Issue with Segmentation

External Email - Use Caution To whom this may concern, I've been running segmentation for over 100 hours and I'm not entirely sure how to fix this issue. Is this the right address to ask for help? Best, Katie ___ Freesurfer mailing lis

[Freesurfer] Can't find longHippoSubfieldsT1.sh

External Email - Use Caution Dear Freesurfer Community, I ran the Freesurfer longitudinal pipeline for my subjects (1.5T, T1_data, 6 timepoints each). Now I want to continue with the longitudinal segmentation of hippocampal subfields:https://secure-web.cisco.com/1GVcN-oB6m3ReFE6G1