Hi Katie
Can you give us more info? What command line did you run? Can you send us the
recon-all.log file from the subject so we can see what step it is on? Usually
this means the topology fixer is trying to fix something giant, like the
cerebellum attached to cortex or skull left around or something
Cheers
Bruce
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Katherine Andrade
Sent: Sunday, February 7, 2021 5:22 PM
To: Freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Issue with Segmentation
External Email - Use Caution
To whom this may concern,
I've been running segmentation for over 100 hours and I'm not entirely sure
how to fix this issue. Is this the right address to ask for help?
Best,
Katie
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