External Email - Use Caution
Ok. But the updated patches will need to be applied to the data generated with
the -hires flag?
Jim
On Jan 24, 2020 5:32 PM, "Greve, Douglas N.,Ph.D."
wrote:
For the -conf2hires, there is no problem because the segmentation is done at
1mm.
On 1/
For the -conf2hires, there is no problem because the segmentation is done at
1mm.
On 1/24/2020 5:17 PM, Alexopoulos, Dimitrios wrote:
External Email - Use Caution
I came across info for version 6.0 that generated statistical errors when using
high resolution input.
https://surfer.nmr.mg
External Email - Use Caution
I came across info for version 6.0 that generated statistical errors when using
high resolution input.
https://surfer.nmr.mgh.harvard.edu/fswiki/BrainVolStatsFixed
We have used the '-hires' flag and, more recently, the '-conf2hires' flag with
recon-a
Good question! It’s ok if only the hippo is covered.
Cheers,
/E
Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
http://www.jeiglesias.com
From: on behalf of Rene Seiger
Reply-To: Freesurfer support list
Date: Friday, 24 January 2020 at 12:15
To: "freesurfer
External Email - Use Caution
Dear Juan,
Thank you very much for you answer! However, I ran into another issue
using the new tool: It is stated: 'Using the additional scan in
isolation is advised when it is of higher resolution than the T1 while
covering the whole hippocampi an
Unfortunately, I'm not sure if that original dockerfile is available anymore,
but freeview was never intended to be run from that image anyway as X11
forwarding wasn't supported (maybe it is now though). I'd recommend following
marcosm's suggestion of tackling the library errors as they appear.
External Email - Use Caution
On Fri, Jan 24, 2020 at 10:32 AM Greve, Douglas N.,Ph.D. <
dgr...@mgh.harvard.edu> wrote:
>
>
> On 1/22/2020 2:13 PM, Graduate Imaging wrote:
>
> External Email - Use Caution
>
>
> On Tue, Jan 21, 2020 at 10:40 AM Greve, Douglas N.,Ph.D. <
> dg
The run-wise functionality was added after selxavg was written as a way to help
debug. If you want all the runs in your group analysis, why not turn off the
run-wise flag?
On 1/22/2020 4:40 PM, Rami Hamati wrote:
External Email - Use Caution
Hello freesurfers,
I'm attempting to run se
It did not look like there was an explicit error in that log file, it just
stops at mris_volmask. Is that the right recon-all? Also, please just send the
text file so that we don't have to unzip it.
On 1/22/2020 4:39 PM, Laurel Quinlan wrote:
External Email - Use Caution
Hi FS Support,
On 1/22/2020 2:13 PM, Graduate Imaging wrote:
External Email - Use Caution
On Tue, Jan 21, 2020 at 10:40 AM Greve, Douglas N.,Ph.D.
mailto:dgr...@mgh.harvard.edu>> wrote:
On 1/17/2020 10:39 AM, Graduate Imaging wrote:
External Email - Use Caution
Hello,
I recently ran a v
you will have to create a binary mask from the sig map by thresholding at a
given level, eg,
mri_binarize --i sig.mgh --min 2 --o sig.bin2.mgh
Then run
mri_segstats --i y.mgh --seg sig.bin2.mgh --id 1 --avgwf y.bin2.dat
where y.mgh is the --y input to mri_glmfit
--id 1 means to take the forground
On 1/22/2020 2:54 AM, Christian Krog Tamnes wrote:
External Email - Use Caution
Dear FS experts,
I came across this post about a bug related to global measures of volume from
version 6.0:
https://surfer.nmr.mgh.harvard.edu/fswiki/BrainVolStatsFixed
I have two questions that I hope so
I would normalize all the variables. Eg, column 2 is nearly identical to column
1
On 1/22/2020 1:03 AM, vittal korann wrote:
External Email - Use Caution
Dear Douglas
I did normalize ICV values. This is something else I guess.
With regards
Vittal
On Tue, Jan 21, 2020 at 6:09 PM vit
I'm guessing that there is something wrong with the label. Can you send it?
On 1/21/2020 8:08 PM, Tien Pham wrote:
External Email - Use Caution
Thank you for your e-mail.
I also could not load the label in freeview. The terminal showed the following
error:
2020-01-22 09:56:18.064 Freev
I don't know. Can you reconfigure to English to do a test?
On 1/21/2020 12:14 PM, Marcos Martins da Silva wrote:
External Email - Use Caution
FreeSurfer 6 over CentOS 7. I have the same problem with 5.3 too. One more
information: CentOS 7 is configured as PT-br instead of English. Could
Dear Dawn,
Thank you very much for your interest in the tool, but we do not have such a
dataset, sorry! Having said that, I don’t think the alveus should make a big
difference in Dice scores…
Cheers,
/E
Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
http://www
16 matches
Mail list logo
