It did not look like there was an explicit error in that log file, it just
stops at mris_volmask. Is that the right recon-all? Also, please just send the
text file so that we don't have to unzip it.
On 1/22/2020 4:39 PM, Laurel Quinlan wrote:
External Email - Use Caution
Hi FS Support,
I have two brains for which recon-all exited with errors after I edited the
wm.mgz volume. It seems that the problem occurs during the mri_segstats and
mri_relabel_hypointensities steps (if I'm reading the output of the command
"tail scripts/recon-all.log" correctly). I attached one of the recon-all.log
files as a zipped txt file. Please let me know if you have troubleshooting
suggestions.
Thank you for your help!
Laurel Quinlan
Research Specialist
Center for Healthy Minds
University of Wisconsin-Madison
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