Unfortunately, I'm not sure if that original dockerfile is available anymore,
but freeview was never intended to be run from that image anyway as X11
forwarding wasn't supported (maybe it is now though). I'd recommend following
marcosm's suggestion of tackling the library errors as they appear. Installing
xorg and mesa-libGLU should be a good place to start.
best
Andrew
________________________________________
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Arnaud Boré
<arnaud.b...@gmail.com>
Sent: Friday, January 17, 2020 3:16 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] freesurfer container - freeview error
External Email - Use Caution
Hi,
Thank you for your quick response. Is there a way to have access to the
definition of the official docker? I could also help to find which libraries
are missing.
Thank you for help
Arnaud
Le ven. 17 janv. 2020 12 h 00, Hoopes, Andrew
<ahoo...@mgh.harvard.edu<mailto:ahoo...@mgh.harvard.edu>> a écrit :
Hi Arnaud,
If you want to forward graphics from singularity, you will probably need to
install some extra libraries in the container. I've never actually tested this,
so I'm not even sure that it's possible, but according to singularity's doc at
https://singularity-tutorial.github.io you should at least try to install xorg
and work from there.
best
Andrew
________________________________________
From:
freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
<freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
on behalf of Arnaud Boré <arnaud.b...@gmail.com<mailto:arnaud.b...@gmail.com>>
Sent: Friday, January 17, 2020 11:34 AM
To: Freesurfer support list
Subject: [Freesurfer] freesurfer container - freeview error
External Email - Use Caution
Dear Freesurfer' experts,
I've created a singularity container from the official docker hub freesurfer
repository (https://hub.docker.com/r/freesurfer/freesurfer)
When running: singularity exec freesurfer.sif freeview I get this error:
freeview_bin: error while loading shared libraries: libGLU.so.1: cannot open
shared object file: No suche file or directory.
I would like to know if this is something related to the containers or the host
computer and some tips to fix this. I tested the singularity on different
computers/laptops and ended up with the same error so I think there is an issue
with the singularity/docker container.
Thank you in advance
Arnaud
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu>
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
