External Email - Use CautionDear there, I tried to process “Segmentation of thalamic nuclei” using source the FreeSurfer development version(freesurfer-linux-centos6_x86_64-dev.tar.gz).The OS of my notebook CentOS (6.10).MATLAB --> /usr/local/MATLAB/R2017bMRCv84 --> /usr/local/frees
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Hello John,
You might be able to tell from the log what directory recon-all was cd'd
into when the creation of the soft link failed. You could try to cd
there as your userid (which I assume you used to run recon-all), and see
if you can manually
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I tried to extract cc labels from aseg.auto.mgz file and extract the labels
subregions of cc from the cc.mgz file (cc.mgz contain the segmented
subregions of corpus callosum) using mri_vol2label command.
On Fri, Jun 21, 2019 at 11:23 PM Bruce Fischl
w
well, we don't run only those steps to generate any volume. Probably your
best bet would be the norm.mgz, although as Doug says it will have a
cerebellum in it, which you can strip with the aseg.mgz
cheers
Bruce
On Sun, 23 Jun 2019, ping cao wrote:
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Thank you for your reply.
I also want to know which file has just finished with 1-3 steps?
Is it nu.mgz? Or nu.mgz?
*T1.mgz* aseg.presurf.mgz
> aparc+aseg.mgz brain.finalsurfs.mgz
It does 1-3. It also labels cerebellum which you could then use to perform #4
On 6/23/2019 7:03 AM, ping cao wrote:
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Dear expert，
Thank you for reading!
I want to do these four pre-processing steps:
1. Re-sampling each MR image to 256*256*256;
2. Using the N
