External Email - Use Caution I tried to extract cc labels from aseg.auto.mgz file and extract the labels subregions of cc from the cc.mgz file (cc.mgz contain the segmented subregions of corpus callosum) using mri_vol2label command.
On Fri, Jun 21, 2019 at 11:23 PM Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > can you send us the full command line and screen output? Doug might have > an easy way to do it, but personally I would do it in matlab > cheers > Bruce > On Fri, 21 Jun > 2019, Sadia Sheikh wrote: > > > > > External Email - Use Caution > > > > Thanks for your reply. I want to get the voxel coordinates of CC and > its subregions. I tried using > > the command mri_vol2label for cc subregions also. But still I am getting > the error message: found no > > voxels matching id 251. > > What is the right command to get the coordinates of CC? > > > > Thanks in advance. > > Sadia > > > > > > On Thu, Jun 20, 2019 at 11:08 PM Bruce Fischl < > fis...@nmr.mgh.harvard.edu> wrote: > > Hi Sadia > > > > we subdivide the cc into multiple components: > > > > 251 CC_Posterior 0 0 64 0 > > 252 CC_Mid_Posterior 0 0 112 0 > > 253 CC_Central 0 0 160 0 > > 254 CC_Mid_Anterior 0 0 208 0 > > 255 CC_Anterior 0 0 255 0 > > > > > > cheers > > Bruce > > > > On Thu, 20 Jun > > 2019, Sadia > > Sheikh wrote: > > > > > > > > External Email - Use Caution > > > > > > Dear Freesurfer experts > > > How can I get the voxel coordinates of the segmented corpus > callosum? I tried using > > the command > > > mri_vol2label and id of the corpus callosum as 192 as given in > Freesurfer LUT, > > > but it gives an error: found no voxels matching id 192 > > > > > > Thanks in advance > > > > > > Sadia > > > > > >_______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > >_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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