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Dear there,
I tried to process “Segmentation of thalamic nuclei” using source the FreeSurfer development version(freesurfer-linux-centos6_x86_64-dev.tar.gz).
The OS of my notebook CentOS (6.10).
MATLAB --> /usr/local/MATLAB/R2017b
MRCv84 --> /usr/local/freesurfer/MCRv84
I filled out “segmentThalamicNuclei.sh bert [SUBJECTS_DIR].
In my notebook, there was the message such as attached file.
Best,
------------------------------ USER GW HOST gwkim PROCESSID 4990 PROCESSOR x86_64 OS Linux ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS 1 Linux gwkim 2.6.32-754.14.2.el6.x86_64 #1 SMP Tue May 14 19:35:42 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux ------------------------------ freesurfer-local-build-dev-20190621 setenv SUBJECTS_DIR /home/GW/test cd /home/GW/test/002_T1T2_Hippo /usr/local/freesurfer/bin/segmentThalamicNuclei.sh 002_T1T2_Hippo
#-------------------------------------------- #@# Thalamic Nuclei processing 2019. 06. 23. (ì¼) 23:55:32 KST ------------------------------------------ Setting up environment variables --- LD_LIBRARY_PATH is .:/usr/lib64:/usr/local/freesurfer/MCRv84//runtime/glnxa64:/usr/local/freesurfer/MCRv84//bin/glnxa64:/usr/local/freesurfer/MCRv84//sys/os/glnxa64:/usr/local/freesurfer/MCRv84//sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/usr/local/freesurfer/MCRv84//sys/java/jre/glnxa64/jre/lib/amd64/server:/usr/local/freesurfer/MCRv84//sys/java/jre/glnxa64/jre/lib/amd64/client:/usr/local/freesurfer/MCRv84//sys/java/jre/glnxa64/jre/lib/amd64: /usr/local/freesurfer/bin/SegmentThalamicNuclei: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.15' not found (required by /usr/local/freesurfer/MCRv84//bin/glnxa64/libmwi18n.so) /usr/local/freesurfer/bin/SegmentThalamicNuclei: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.15' not found (required by /usr/local/freesurfer/MCRv84//bin/glnxa64/libmwservices.so) /usr/local/freesurfer/bin/SegmentThalamicNuclei: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.15' not found (required by /usr/local/freesurfer/MCRv84//bin/glnxa64/libmwctfpackage.so) /usr/local/freesurfer/bin/SegmentThalamicNuclei: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.15' not found (required by /usr/local/freesurfer/MCRv84//bin/glnxa64/libboost_date_time.so.1.49.0) /usr/local/freesurfer/bin/SegmentThalamicNuclei: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.15' not found (required by /usr/local/freesurfer/MCRv84//bin/glnxa64/libboost_thread.so.1.49.0) /usr/local/freesurfer/bin/SegmentThalamicNuclei: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.15' not found (required by /usr/local/freesurfer/MCRv84//bin/glnxa64/libut.so) /usr/local/freesurfer/bin/SegmentThalamicNuclei: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.15' not found (required by /usr/local/freesurfer/MCRv84//bin/glnxa64/libmwfl.so) /usr/local/freesurfer/bin/SegmentThalamicNuclei: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.15' not found (required by /usr/local/freesurfer/MCRv84//bin/glnxa64/libmwmlutil.so) /usr/local/freesurfer/bin/SegmentThalamicNuclei: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.15' not found (required by /usr/local/freesurfer/MCRv84//bin/glnxa64/libmwsettingscore.so) /usr/local/freesurfer/bin/SegmentThalamicNuclei: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.15' not found (required by /usr/local/freesurfer/MCRv84//bin/glnxa64/libmwms.so) /usr/local/freesurfer/bin/SegmentThalamicNuclei: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.15' not found (required by /usr/local/freesurfer/MCRv84//bin/glnxa64/libmwopccore.so) /usr/local/freesurfer/bin/SegmentThalamicNuclei: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.15' not found (required by /usr/local/freesurfer/MCRv84//bin/glnxa64/libmwopcmodel.so) /usr/local/freesurfer/bin/SegmentThalamicNuclei: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.15' not found (required by /usr/local/freesurfer/MCRv84//bin/glnxa64/libmwopczippackage.so) /usr/local/freesurfer/bin/SegmentThalamicNuclei: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.15' not found (required by /usr/local/freesurfer/MCRv84//bin/glnxa64/libmwopcmwservices.so) /usr/local/freesurfer/bin/SegmentThalamicNuclei: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.15' not found (required by /usr/local/freesurfer/MCRv84//bin/glnxa64/libboost_serialization.so.1.49.0) /usr/local/freesurfer/bin/SegmentThalamicNuclei: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.15' not found (required by /usr/local/freesurfer/MCRv84//bin/glnxa64/libboost_log.so.1.49.0) /usr/local/freesurfer/bin/SegmentThalamicNuclei: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.15' not found (required by /usr/local/freesurfer/MCRv84//bin/glnxa64/libboost_log_setup.so.1.49.0) /usr/local/freesurfer/bin/SegmentThalamicNuclei: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.15' not found (required by /usr/local/freesurfer/MCRv84//bin/glnxa64/libPocoFoundation.so.21) /usr/local/freesurfer/bin/SegmentThalamicNuclei: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.15' not found (required by /usr/local/freesurfer/MCRv84//bin/glnxa64/libboost_regex.so.1.49.0) /usr/local/freesurfer/bin/SegmentThalamicNuclei: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.15' not found (required by /usr/local/freesurfer/MCRv84//bin/glnxa64/libboost_signals.so.1.49.0) /usr/local/freesurfer/bin/SegmentThalamicNuclei: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.15' not found (required by /usr/local/freesurfer/MCRv84//bin/glnxa64/libmwflnetwork.so) @#@FSTIME 2019:06:23:23:55:32 run_SegmentThalamicNuclei.sh N 13 e 0.03 S 0.02 U 0.00 P 93% M 1452 F 0 R 4143 W 0 c 15 w 54 I 0 O 0 L 0.12 0.05 0.01 @#@FSLOADPOST 2019:06:23:23:55:32 run_SegmentThalamicNuclei.sh N 13 0.12 0.05 0.01 Linux gwkim 2.6.32-754.14.2.el6.x86_64 #1 SMP Tue May 14 19:35:42 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux Thalamic nuclei exited with ERRORS at 2019. 06. 23. (ì¼) 23:55:32 KST
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