Re: [Freesurfer] mpr2mni305 failed, during recon-all {Disarmed}

2018-12-23 Thread fsbuild
External Email - Use Caution Hello, I have not tried it, but it would not surprise me to see incomplete library references when running the old freesurfer 5 binaries on the latest version of Mac OS, i.e., Mac OS 10.14 (Mojave) I would try to use the rev 6 release binaries for Mac

[Freesurfer] Error saving NPC results

2018-12-23 Thread Daniel Leopold
External Email - Use Caution Dear Freesurfer Community, Drs. Winkler, Greve, Fischl, et al. *My apologies if this reposts, but this is my first time emailing the listserv, and I'm not sure if my earlier email went through* Could anyone help me understand which palm options are ne

Re: [Freesurfer] mpr2mni305 failed, during recon-all

2018-12-23 Thread Shachar Gal
External Email - Use Caution Sorry, out of the office for the day. I'll get back to you about it tomorrow Shachar On Sun, Dec 23, 2018, 16:56 Glasser, Matthew wrote: > External Email - Use Caution > > Is that FreeSurfer 5.3? > > Matt. > > From: on behalf of Shachar Gal

Re: [Freesurfer] mpr2mni305 failed, during recon-all

2018-12-23 Thread Glasser, Matthew
External Email - Use Caution Is that FreeSurfer 5.3? Matt. From: mailto:freesurfer-boun...@nmr.mgh.harvard.edu>> on behalf of Shachar Gal mailto:gal.shac...@gmail.com>> Reply-To: Freesurfer support list mailto:freesurfer@nmr.mgh.harvard.edu>> Date: Sunday, December 23, 2018 at

Re: [Freesurfer] mpr2mni305 failed, during recon-all

2018-12-23 Thread Shachar Gal
External Email - Use Caution this is my Freesurfer version - freesurfer-i386-apple-darwin10.8.0-stable5-20130513 and I think the update to macOS Mojave was after successfully running the pipeline. you think this could be the issue? should I just upgrade my freesurfer? thanks On

Re: [Freesurfer] mpr2mni305 failed, during recon-all

2018-12-23 Thread Glasser, Matthew
External Email - Use Caution Which version of FreeSurfer is this and did you do some OS upgrade in between? Matt. From: mailto:freesurfer-boun...@nmr.mgh.harvard.edu>> on behalf of Shachar Gal mailto:gal.shac...@gmail.com>> Reply-To: Freesurfer support list mailto:freesurfer@n

[Freesurfer] mpr2mni305 failed, during recon-all

2018-12-23 Thread Shachar Gal
External Email - Use Caution hello, I'm running the hcp's FreeSurfer pipeline, and for some reason, after working successfully several times, on different subjects, im getting this error: *** /Users/georgieboy/Research/Piano/test/222/222/mri \n mri_nu_correct.mni --n 1 --proto-iter