Re: [Freesurfer] Running Linear Mixed Effects (LME) Model

The continuous variable in my analysis is time_base_scan with the time points evaluated by me being of acute and subacute nature. However, due to the small differences in time elapsed between successive visits (duration between visits is a couple of weeks), is it possible to simply model LME ana

Re: [Freesurfer] Unsubscribing

Hi Barnali every FreeSurfer list message comes with a link to a list management page at the bottom (as most well-maintained list messages do). You can take yourself off whenever you want. cheers Bruce On Wed, 4 Apr 2018, Barnali Basu wrote: Hi , I have not used this for years, could you ple

[Freesurfer] MRIxfmCRS2XYZtkreg function

Dear Freesurfer community, I have stumbled upon a function called MRIxfmCRS2XYZtkreg in the Freesurfer source code on Github. It is used in several places but does not seem to be defined anywhere in the repository. Is it part of some external library? Would it be possible to take a look at its

Re: [Freesurfer] which dev version for amygdala segmentation

Hi Ani, sorry for the slow response (Easter...). The script should be in $FREESURFER_HOME/bin, which is automatically added to your path when you source FreeSurfer. Cheers, /Eugenio Juan Eugenio Iglesias Translational Imaging Group University College London http://www.jeiglesias.com http

[Freesurfer] Full-Time Research Assistant Position in Clinical Neuroscience at Ohio State University

Posted on behalf of Dr. Ruchika Prakash: Research Assistant Position Clinical Neuroscience Laboratory Department of Psychology Ohio State University Applications are being sought for a full-time research assistant position, Clinical Neuroscience Laboratory

[Freesurfer] Unsubscribing

Hi , I have not used this for years, could you please take me off the mailing list? Thank you Barnali Basu Cell : 425 638 2936 Home: 206 257 0174 ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/li

Re: [Freesurfer] Freesurfer6.0 failure

Hi Naka, sorry, this dropped through the cracks. I had solved a similar problem for someone else and thought they were the same problem! Can you upload your subject's dir to our file drop? https://gate.nmr.mgh.harvard.edu/filedrop2 On 04/04/2018 04:14 AM, Naka Beguedou wrote: > Hi Bruce, > >

Re: [Freesurfer] extracting morphometric values from co-ordinates

Many Thanks Bruce. Will try that out On Wed, Apr 4, 2018 at 2:57 PM, Bruce Fischl wrote: > Hi Emmanuel, > > you could create a label in MNI coords, then map it to a group of > subjects using mri_label2label. "Value at a point" only makes sense for > point measures like thickness though. > > chee

Re: [Freesurfer] mirroring fsaverage labels between hemispheres

Still stuck - I downloaded the bin for mris_left_right_register from https://gate.nmr.mgh.harvard.edu/safelinks/greve/mris_left_right_register and ran it from the fsaverage surf directory: $PROJECTDIR/mris_left_right_register lh.sphere rh.sphere lh.sphere.left_right rh.sphere.left_right (Yes, it

[Freesurfer] Longitudinal Freesurfer Analysis

Hi, I have a question regarding the longitudinal processing stream in FreeSurfer, is it possible to use the processing stream if both baseline and endline data have already been edited with control points? Thanks! Katie McKay ___ Freesurfer mailing

Re: [Freesurfer] extracting morphometric values from co-ordinates

Hi Emmanuel, you could create a label in MNI coords, then map it to a group of subjects using mri_label2label. "Value at a point" only makes sense for point measures like thickness though. cheers Bruce On Wed, 4 Apr 2018, Emmanuel Nwosu wrote: > Dear FreeSurfer Experts, > > Am wondering if

Re: [Freesurfer] using T2 for hippo subfields

no it is not required cheers Bruce On Wed, 4 Apr 2018, Alexopoulos, Dimitrios wrote: Per an earlier post below, is an 'expert_file' always required when using the -hires option? Jim From: fre

[Freesurfer] extracting morphometric values from co-ordinates

Dear FreeSurfer Experts, Am wondering if there is a way to extract morphometry (cortical thickness, area, etc) values from a specific co-ordinate (talaraich, MNI, etc) of interest. Any help with this will be appreciated. Kind regards Emmanuel ___ Frees

Re: [Freesurfer] FSGD file error

Dear Doug, Demeaning the covariate indeed does seem to work. I did not have to multiply subjects for this. Thank you so much for your help! From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N. Grev

Re: [Freesurfer] Freesurfer6.0 failure

Hi Bruce, did you solve out my problem? Naka - Mail original - De: "Bruce Fischl" À: "freesurfer" Envoyé: Mardi 13 Mars 2018 16:05:14 Objet: Re: [Freesurfer] Freesurfer6.0 failure Hi Naka we have tracked down this problem and should have a patch soon cheers Bruce On Tue, 13 Mar 2