Hi Ani, sorry for the slow response (Easter...).
The script should be in $FREESURFER_HOME/bin, which is automatically added to your path when you source FreeSurfer. Cheers, /Eugenio Juan Eugenio Iglesias Translational Imaging Group University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/ ________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Anik Dar <aniqa...@gmail.com> Sent: Thursday, March 29, 2018 9:26:45 PM To: Freesurfer support list Subject: [Freesurfer] which dev version for amygdala segmentation Hi All, How do I download reqd. files / FS developmental version to run hippocampal/amygdala pipeline as described in the wiki https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfieldsAndNucleiOfAmygdala I tried downloading the el capitan version of the development version of freesurfer from the https://surfer.nmr.mgh.harvard.edu/fswiki/DownloadAndInstall and I cant find any code segmentHA_T1.sh Can anyone help, Thanks Ani
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