Hi Naka, sorry, this dropped through the cracks. I had solved a similar problem for someone else and thought they were the same problem! Can you upload your subject's dir to our file drop? https://gate.nmr.mgh.harvard.edu/filedrop2
On 04/04/2018 04:14 AM, Naka Beguedou wrote: > Hi Bruce, > > did you solve out my problem? > > Naka > > > ----- Mail original ----- > De: "Bruce Fischl" <fis...@nmr.mgh.harvard.edu> > À: "freesurfer" <freesurfer@nmr.mgh.harvard.edu> > Envoyé: Mardi 13 Mars 2018 16:05:14 > Objet: Re: [Freesurfer] Freesurfer6.0 failure > > Hi Naka > > we have tracked down this problem and should have a patch soon > > cheers > Bruce > > > On Tue, 13 Mar 2018, Naka Beguedou wrote: > >> >> Hello, >> I allow myself to send you this mail in order to have some informations. we >> have a problem concerning the segmentation of FREESURFER6.0 >> Indeed for T1image of one subject, the surface segmentation(figure1) is >> accurate but there is failure on the cortical segmentation(figure2) of the >> right hemisphere for the free surfer 6.0. >> For that subject, we relaunched the free surfer6.0 , but still the same >> problem. >> Here is the command we used to relaunch the free surfer6.0 for that subject: >> recon-all -all -FLAIR FLAIR/FLAIR_585.nii.gz -i T1/T1_585.nii.gz >> -brainstem-structures -3T -contrasurfreg -qcache -subjid SHARE0585_2 -sd >> /scratch/alaurent006/freesurfer_end -FLAIRpial >> >> What can we do about it? >> >> Thanks >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
