Re: [Freesurfer] hello freesurfer developer~

hello experts i have some question to you What is the meaning about cortical thickness alteration (increase or decrease) a few days ago i read these sentences Deviations from these patterns can be used as diagnostic indicators for brain disorders :

Re: [Freesurfer] REPOST recon-all per hemisphere

Hi Clara the -cp and -wm both get run by -cp. So run that until the volume stream is done and the orig surfaces are created (or just before if you want), then run the perhemi I think. cheers Bruce On Fri, 12 Feb 2016, Clara Kühn wrote: Dear FreeSurfer experts, I hava a question regard

[Freesurfer] freeSurfer make option is not compatible with pial refinement option

Dear FreeSurfer experts, I have some inquiries concerning the "make" option in recon-all: 1. It seems to me that the freeSurfer "make" option in recon-all (at least in 5.3.0 version) is not compatible with -FLAIRpial / -T2pial option. I made some manual edits which required rerun of autorecon2

[Freesurfer] REPOST recon-all per hemisphere

Dear FreeSurfer experts, I hava a question regarding rerunning the recon-process. I have cases where I do manual edits on a brain and only set a few control points on one hemisphere but white matter edits on the other. I would then run the -cp flag for one hemisphere and the -wm flag for the o

[Freesurfer] R: R: Re: To use a ROI.label as seed in FS-FAST

Please also consider that the T1, f.nii and ROI.ii.gz (obtained by label2vol) are nice overlapped. The brain.mni305.2mm.nii seem to be strange (see the image attached). In the sig.nii.gz the cluster are bad coregistered and some of those out are of the brain. Thanks Stefano Messaggio orig

Re: [Freesurfer] abnormal inflated surface

I agree that the inflated is fine. It doesn't live in any particularly interesting volumetric coordinate system, so displaying it that way doesn't really make sense. As for the hippocampus, it looks fine on the slices you sent. If you upload the dataset I'll take a look cheers Bruce On Wed, 10

Re: [Freesurfer] Freeview to mark only one specific area

Hi Luis you can run mri_annotation2label and just load the label you want. cheers Bruce On Fri, 12 Feb 2016, Luis Fernado Silva Castro de Araújo wrote:  Hello Freesurfer experts, I want either a 2D or 3D picture of one of my subjects image, but with only one colored area. For example, I wou

Re: [Freesurfer] FreeSurfer Course Tours, France, 26-27/05/2016

Bon problem ; I guessed it was something like this ; ) Christophe Destrieux, Unité « Imagerie et Cerveau » UMRS INSERM U930, Université François Rabelais de Tours http://www.u930.tours.inserm.fr/ Service de Neurochirurgie et Laboratoire d'Anatomie - Facult

Re: [Freesurfer] FreeSurfer Course Tours, France, 26-27/05/2016

Hi Christophe, Apologies, I wanted to forward the mail but instead replied to it. ;) Regards, Caroline Van: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] Namens Christophe Destrieux Verzonden: vrijdag 12 februari 2016 10:45 Aan: Freesurfer support list

Re: [Freesurfer] FreeSurfer Course Tours, France, 26-27/05/2016

Dear Caroline could you please resend it in english or in French ; I’m not too familiar with Flamish ; ) thanks Christophe Destrieux, Unité « Imagerie et Cerveau » UMRS INSERM U930, Université François Rabelais de Tours http://www.u930.tours.inserm.fr/ Se

Re: [Freesurfer] FreeSurfer Course Tours, France, 26-27/05/2016

Dag Jolijn, Heb jij je al aangemeld voor onderstaande Freesurfer course? Er is volgens mij nog steeds niets van die andere beschikbaar, dus ik twijfel ook om te gaan (zou wel nuttig zijn!). Al is het een beetje achter de feiten aan… Vriendelijke groet, Caroline Van: freesurfer-boun...@nmr.mgh