Hello,We have been examining the pial surface adjustment with FLAIR scans, and the improvement is quite dramatic. There are MANY areas where the pial surface was clearly wrong and has been substantially improved, considerably reducing (often eliminating) the need for manual pial corrections. I sugg
On 5/18/14, 3:22 PM, "Sherryse Corrow"
wrote:
>Hi Douglas,
>
>Okay, trying again.
>
>Problem: When we run the command line below, and then open the folder
>experiment.feat/reg/freesurfer, there is no
>anat2exf.register.dat file. However, there is a file called:
>anat2exf.register.dat.init.
>
>
Dear Freesurfers,
Is there a way to smooth already preprocessed functional images* (FEAT, FSL),
which I coregistered to the reconstructed surfaces (reg feat2anat), on the
cortical surface?
Furthermore, I would be interested in finding the cluster peak vertex after
smoothing the EPI on the reco
That doesn't sound good. Does tag 28, 30 mean the voxel size is missing,
why would this be? It is a Siemens dicom from a 3T scanner - not sure which
model but I can find out.
Do you have any idea why I am getting errors for some runs in the scan.
info file as such?:
7 t1_mprage_tra_p2_iso_1.0 err
Von: freesurfer-boun...@nmr.mgh.harvard.edu
[freesurfer-boun...@nmr.mgh.harvard.edu]" im Auftrag von "Bruce
Fischl [fis...@nmr.mgh.harvard.edu]
Gesendet: Freitag, 23. Mai 2014 14:52
An: Freesurfer support list
Betreff: Re: [Freesurfer] WG: [Fwd: WG: miss
Hi Maia
it's hard to say since I don't really know what steps worked in 5.3 or
why vs. 5.1. I guess you could try starting from after the normalization in
5.1 and seeing if they go through the rest of recon-all
Bruce
On Tue, 20 May 2014, Maia Pujara wrote:
Thanks for your response, Bruce.
Dear Freesurfer-Experts,
I would like to create gifti-surfaces to use in matlab.
That's what I am doing so far:
mris_convert lh.white lh.white.gii
I then try to open it using the "gifti" command
(http://www.artefact.tk/software/matlab/gifti/)
however, I get an error message from matlab:
>
Hi Kristina
don't add CPs to the gray matter - that will mess everything up!
Bruce
On Fri, 23
May 2014, Mayer Kristina wrote:
Dear Bruce
My dataset is very young (around 2 years of age), I suppose the contrast
and size is just different from the default-template of freesurfer. Is
there a wa
