Or matlab
On May 22, 2013, at 10:43 PM, Thomas Yeo wrote:
> you can probably use fscalc.fsl. Type "fscalc.fsl --help" for more
> information.
>
> --Thomas
>
> On Thu, May 23, 2013 at 9:26 AM, Minjie Wu wrote:
>> Hello All,
>>
>> Is there any way in FreeSurfer to take the log transform of
you can probably use fscalc.fsl. Type "fscalc.fsl --help" for more information.
--Thomas
On Thu, May 23, 2013 at 9:26 AM, Minjie Wu wrote:
> Hello All,
>
> Is there any way in FreeSurfer to take the log transform of a .mgh file and
> save the output as .mgh file?
>
> Thank you.
>
> Minjie
> __
Hello All,
Is there any way in FreeSurfer to take the log transform of a .mgh file and
save the output as .mgh file?
Thank you.
Minjie
___
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.el5 #1 SMP Tue Oct 2 22:01:43
> EDT 2012 x86_64 x86_64 x86_64 GNU/Linux
> recon-all -s sub4422b exited with ERRORS at Mon May 20
> "
>
> Any ideas for why it is, or how we can fix the problem at the temporal
> lobes, will be really appreciated.
>
> Thanks,
> Cherry
>
Hi Michael,
This method seems cool. I'll try to implement it. Thank you so much.
Best,
Cherry
On Wed, May 22, 2013 at 4:17 PM, Harms, Michael wrote:
>
> I've also posted in the past on a set of "expert options" that helped
> our surfaces in the temporal lobe considerably. You should be able
Ok. I'll give it a try. Thanks, Chris & Bruce!
On Wed, May 22, 2013 at 3:29 PM, Bruce Fischl wrote:
> Hi Cherry
>
> Chris is right. Putting control points in the WM will help the pial
> surface as well.
>
> cheers
> Bruce
>
> On Wed, 22 May 2013, Yizhou Ma wrote:
>
> Hi Chris,
>> Thanks a lot.
Hi Cherry
Chris is right. Putting control points in the WM will help the pial
surface as well.
cheers
Bruce
On Wed, 22 May 2013, Yizhou Ma wrote:
> Hi Chris,
> Thanks a lot. I agree that control points should actually only be put in
> white matter. I'm just not sure if I can expand the pial sur
Hi Chris,
Thanks a lot. I agree that control points should actually only be put in
white matter. I'm just not sure if I can expand the pial surface to a
satisfactory extend if I only do edits in the white matter. It seems to me
that the problem here is that the signal weakened in the lower part of
You need to place the control points in the white matter, not around it.
On 05/22/2013 03:04 PM, Yizhou Ma wrote:
Dear FS experts,
I have a subject where large portions of temporal lobe is not included
in the pial surface. A member in my lab has suggested edits on
brain.finalsurfs.mgz. Howeve
Hi Cathy,
I think the problem is when there are tabs AND spaces. Only spaces
should also work. I can write some code (when I have time) that checks
these things, maybe for the next release.
Best, Martin
On 05/22/2013 02:21 PM, Catherine Bois wrote:
> Hi,
>
> Thank you for your reply. I finally
Hi Cathy,
it must be something else (I think). The mris_calc command looks weird
("--label " looks like the label is not passed, but a space instead, it
then thinks 'mul' is a file).
qdecfinal is your qdec table? Make sure it contains only spaces to
separate the fields. It should have at leas
> > 1) In a design with group and gender as discrete factors and age
>> > as a continuous factor, why is it that QDEC only displays the
>> > contrast "Does the avg thickness, accounting for gender, differ
>> > between group1 and group2?" and not also "..acounting for
Hi,
I have run recon-all -s bert -all to try my installation and it worked.
Now, when I try to use other command (and also again recon-all -s bert
-all) I always get this:
dyn1097-8:subjects cpellica$ tkmedit bert orig.mgz
-bash: tkmedit: command not found
dyn1097-8:subjects cpellica$ tkmedit -s
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