Ok. I'll give it a try. Thanks, Chris & Bruce!
On Wed, May 22, 2013 at 3:29 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>wrote: > Hi Cherry > > Chris is right. Putting control points in the WM will help the pial > surface as well. > > cheers > Bruce > > On Wed, 22 May 2013, Yizhou Ma wrote: > > Hi Chris, >> Thanks a lot. I agree that control points should actually only be put in >> white matter. I'm just not sure if I can expand the pial surface to a >> satisfactory extend if I only do edits in the white matter. It seems to me >> that the problem here is that the signal weakened in the lower part of the >> brain so that the gray matter doesn't have adequate intensity to be >> included >> in the pial surface (the values are around 30). >> >> Thanks, >> Cherry >> >> >> On Wed, May 22, 2013 at 3:14 PM, Chris Watson >> <Christopher.Watson@childrens.**harvard.edu<christopher.wat...@childrens.harvard.edu>> >> wrote: >> You need to place the control points in the white matter, not >> around it. >> >> On 05/22/2013 03:04 PM, Yizhou Ma wrote: >> Dear FS experts, >> I have a subject where large portions of temporal lobe is not >> included in the pial surface. A member in my lab has suggested >> edits on brain.finalsurfs.mgz. However, in the following page it >> is indicated that edits on brain.finalsurfs.mgz is only intended >> for cases regarding inclusion of cerebellum. Can anyone please >> let me know which volume I should be working on in this case? >> >> http://ftp.nmr.mgh.harvard.**edu/fswiki/FsTutorial/**PialEdits<http://ftp.nmr.mgh.harvard.edu/fswiki/FsTutorial/PialEdits> >> >> Thanks, >> Cherry >> >> >> ______________________________**_________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.**edu/mailman/listinfo/**freesurfer<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mai >> l >> contains patient information, please contact the Partners Compliance >> HelpLin >> e at >> http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. >> If the e-mail was sent to you in er >> ror >> but does not contain patient information, please contact the sender and >> prop >> erly >> dispose of the e-mail. >> >> >> >> >> >>
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