Re: [Freesurfer] mris_label2annot mislabeling

2012-06-24 Thread Douglas N Greve
what was your command line? Can you send your color table? It will assign the first label to the first entry in the color table. On 06/24/2012 11:43 AM, Arno Klein wrote: > > yes, but i am confused as to how mris_label2annot uses the color > table. according to > http://surfer.nmr.mgh.harvard.

Re: [Freesurfer] mris_label2annot mislabeling

2012-06-24 Thread Arno Klein
yes, but i am confused as to how mris_label2annot uses the color table. according to http://surfer.nmr.mgh.harvard.edu/fswiki/LabelsClutsAnnotationFiles, each .label file contains columns of vertex numbers, coordinate values, and a column of zeros. i assume that mris_label2annot assigns the coord

Re: [Freesurfer] mris_label2annot mislabeling

2012-06-24 Thread Douglas Greve
Weren't you concerned that the names in the annotation were incorrect? You get to pick the names and the colors to be whatever you want to be. By default, it uses FreeSurferColorLUT.txt. doug On 6/23/12 9:54 PM, Arno Klein wrote: dear doug, thank you for your response. for the custom color