what was your command line? Can you send your color table? It will assign the first label to the first entry in the color table.
On 06/24/2012 11:43 AM, Arno Klein wrote: > > yes, but i am confused as to how mris_label2annot uses the color > table. according to > http://surfer.nmr.mgh.harvard.edu/fswiki/LabelsClutsAnnotationFiles, > each .label file contains columns of vertex numbers, coordinate > values, and a column of zeros. i assume that mris_label2annot assigns > the coordinates in the file to the anatomical name corresponding to > the name of the file, but when i tried to set the color table region > names to be the same as the names of the .label files, the output was > the same as what i sent earlier: > > 1 11829830 Left-Cerebral-Exterior > 2 16119285 Left-Cerebral-White-Matter > ... > > even though my color table didn't have label numbers 1, 2, etc.! > > cheers, > @rno > > On Sun, Jun 24, 2012 at 11:22 AM, Douglas Greve > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> wrote: > > Weren't you concerned that the names in the annotation were > incorrect? You get to pick the names and the colors to be whatever > you want to be. By default, it uses FreeSurferColorLUT.txt. > doug > > > On 6/23/12 9:54 PM, Arno Klein wrote: >> >> dear doug, >> >> thank you for your response. for the custom color table, what do >> i assign for the different anatomical names and color values? >> why wouldn't the names and colors in FreeSurferColorLUT.txt work? >> >> cheers, >> @rno > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
