yes, but i am confused as to how mris_label2annot uses the color table. according to http://surfer.nmr.mgh.harvard.edu/fswiki/LabelsClutsAnnotationFiles, each .label file contains columns of vertex numbers, coordinate values, and a column of zeros. i assume that mris_label2annot assigns the coordinates in the file to the anatomical name corresponding to the name of the file, but when i tried to set the color table region names to be the same as the names of the .label files, the output was the same as what i sent earlier:
1 11829830 Left-Cerebral-Exterior 2 16119285 Left-Cerebral-White-Matter ... even though my color table didn't have label numbers 1, 2, etc.! cheers, @rno On Sun, Jun 24, 2012 at 11:22 AM, Douglas Greve <gr...@nmr.mgh.harvard.edu>wrote: > Weren't you concerned that the names in the annotation were incorrect? > You get to pick the names and the colors to be whatever you want to be. By > default, it uses FreeSurferColorLUT.txt. > doug > > > On 6/23/12 9:54 PM, Arno Klein wrote: > > > dear doug, > > thank you for your response. for the custom color table, what do i > assign for the different anatomical names and color values? why wouldn't > the names and colors in FreeSurferColorLUT.txt work? > > cheers, > @rno > >
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