Hi everyone
For my old subjects I already have aparc.2005 atlas file in the label
directory but not the 2009a version. I want to know how can I make 2009 version
for these subjects without doing the recon-all for them.
Shahin Nasr
PhD in Cognitive Neuroscience
Martinos Imaging Center, MGH
are you really trying to run an fMRI dataset through? recon-all will only
work with T1-weighted anatomicals.
cheers
Bruce
On Fri, 2 Jul 2010, Riskin-Jones, Hannah
wrote:
> Hi,
>
> I am attempting to run an fMRI data set through the freesurfer workflow and
> the skullstripping step seems to be d
Hannah, are you trying to run fMRI data through the anatomical
processing stream? That will certainly not work ...
doug
Riskin-Jones, Hannah wrote:
> Hi,
>
> I am attempting to run an fMRI data set through the freesurfer
> workflow and the skullstripping step seems to be delayed.
>
> It has
Hi,
I am attempting to run an fMRI data set through the freesurfer workflow and
the skullstripping step seems to be delayed.
It has been stuck on the following command line for an inordinate amount of
time.
First Search limited to translation only.
using real data threshold=28.0
Found translat
Those fields are not valid for surface data.
doug
Corey Keller wrote:
> Hi Freesurfers,
>
> I have now successfully registered the functional volume and
> transformed the volume to a surface via mri_vol2surf. I then loaded
> the nifti surface into matlab with MRIread (nii =
> MRIread('example.ni
Hi Freesurfers,
I have now successfully registered the functional volume and
transformed the volume to a surface via mri_vol2surf. I then loaded
the nifti surface into matlab with MRIread (nii =
MRIread('example.nii'). nii.vol is a 1x149x797 matrix. Additionally,
there are variables of vox2ras an
Hi Thomas,
That worked - thanks so much!
Best,
Corey
On Fri, Jul 2, 2010 at 10:06 AM, ythomas wrote:
> Is this a preprocessed (whole brain regression, bandpass filter, etc)
> rest-state volume? If so, I would suggest using the volume before the
> preprocessing (which works well for me).
>
> Tha
Is this a preprocessed (whole brain regression, bandpass filter, etc)
rest-state volume? If so, I would suggest using the volume before the
preprocessing (which works well for me).
Thanks,
Thomas
On Jul 2, 2010, at 9:58 AM, Corey Keller wrote:
> Hi Bruce,
>
> Thanks for the info. I am trying
Hi Corey,
yes, or you can try bbregister to do it automatically.
cheers
Bruce
On Fri, 2 Jul 2010,
Corey Keller wrote:
> Hi Freesurfers,
>
> I know this is probably an easy question, but I am having some trouble
> with it. I am trying to plot functional data (in nifti format) onto a
> pial or in
Hi Freesurfers,
I know this is probably an easy question, but I am having some trouble
with it. I am trying to plot functional data (in nifti format) onto a
pial or inflated surface in matlab. I am uring mri_vol2surf but am
missing the register file. Do I find this from registering the
functional
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