Hi Thomas, That worked - thanks so much!
Best, Corey On Fri, Jul 2, 2010 at 10:06 AM, ythomas <ytho...@csail.mit.edu> wrote: > Is this a preprocessed (whole brain regression, bandpass filter, etc) > rest-state volume? If so, I would suggest using the volume before the > preprocessing (which works well for me). > > Thanks, > Thomas > > On Jul 2, 2010, at 9:58 AM, Corey Keller wrote: > >> Hi Bruce, >> >> Thanks for the info. I am trying to register a resting state >> functional nifti file. I ran bbregister but it was not well aligned >> (pictures are attached). Our thought is that the contrast was not >> strong enough for freesurfer to detect enough common points with the >> anatomical volume. If we feed another example >> functional file with better contrast, could we then use that register >> file to apply to our data? Any thoughts on how we can do this >> betterwithout manually aligning? Thanks again. >> >> Best, >> Corey >> >> On Fri, Jul 2, 2010 at 9:30 AM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> >> wrote: >>> >>> Hi Corey, >>> >>> yes, or you can try bbregister to do it automatically. >>> >>> cheers >>> Bruce >>> On Fri, 2 Jul 2010, Corey Keller wrote: >>> >>>> Hi Freesurfers, >>>> >>>> I know this is probably an easy question, but I am having some trouble >>>> with it. I am trying to plot functional data (in nifti format) onto a >>>> pial or inflated surface in matlab. I am uring mri_vol2surf but am >>>> missing the register file. Do I find this from registering the >>>> functional data to the anatomical surface via tkregister? Thanks. >>>> >>>> -Corey >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>>> >>>> >>> >>> >>> The information in this e-mail is intended only for the person to whom it >>> is >>> addressed. If you believe this e-mail was sent to you in error and the >>> e-mail >>> contains patient information, please contact the Partners Compliance >>> HelpLine at >>> http://www.partners.org/complianceline . If the e-mail was sent to you in >>> error >>> but does not contain patient information, please contact the sender and >>> properly >>> dispose of the e-mail. >>> >>> >> >> <sagittal.png><Screenshot_horizontal.png>_______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
