are you really trying to run an fMRI dataset through? recon-all will only work with T1-weighted anatomicals.
cheers Bruce On Fri, 2 Jul 2010, Riskin-Jones, Hannah wrote: > Hi, > > I am attempting to run an fMRI data set through the freesurfer workflow and > the skullstripping step seems to be delayed. > > It has been stuck on the following command line for an inordinate amount of > time. > > First Search limited to translation only. > > using real data threshold=28.0 > > Found translation: (-1.1, -8.0, -23.9): log p = -22300.7 > > Nine Parameter search. iteration 0 nscales = 0 ... > > > without an error message, I have no clues as to how to fix this problem. > Any suggestions would be much appreciated! > > Thank you so much, > > Hannah > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
