Re: [Freesurfer] Memory alignment issues?

2008-11-07 Thread Nick Schmansky
Jason, I'm not aware of this issue. What distribution do you have? Type 'bugr' to get this info. Nick On Fri, 2008-11-07 at 13:42 -0800, Jason S. Minamora wrote: > Hello, > > tkmedit and tksurfer fail to start because of bus errors. The > problem seems to happen at random times, but ne

[Freesurfer] Memory alignment issues?

2008-11-07 Thread Jason S. Minamora
Hello, tkmedit and tksurfer fail to start because of bus errors. The problem seems to happen at random times, but never when launching one of these programs for the first time after power-cycling the machine. (from `uname -a') Darwin localhost 9.5.0 Darwin Kernal Version 9.5.0: Wed Sep 3

Re: [Freesurfer] fslcalc.fsl

2008-11-07 Thread Doug Greve
How many vertices does that subject have and is there a prime factor less than 2^15? doug On Thu, 6 Nov 2008, Akram Bakkour wrote: Hello, Thanks for adapting fslcal.fsl to work on surfaces Doug. This is very helpful. It was working for me until today. I'm working on thigpen. setenv SUB

[Freesurfer] availability of freesurfer version 4.0.1

2008-11-07 Thread Burmicz, Ryzarda
Hello, I have some data which was recon-all'd using 4.0.1 and I have since lost this version of the software. Would it be possible to get hold of 4.0.1 in order to rerun some corrected brains? Thanks, Rysia ___ Freesurfer mailing list Freesurfer@nmr

Re: [Freesurfer] DEALING WITH INTENSITY NORMALIZATION PROBLEMS

2008-11-07 Thread Bruce Fischl
Hi David, are the control points in the subject's tmp/edit.dat file? When you say it doesn't work what do you mean? What happens? Are you using recon-all? What version of FreeSurfer are you using? cheers, Bruce On Fri, 7 Nov 2008, david felps wrote: Hi Bruce, hi Susan, i was trying to s

[Freesurfer] DEALING WITH INTENSITY NORMALIZATION PROBLEMS

2008-11-07 Thread david felps
Hi Bruce, hi Susan, i was trying to solve the intensity normalization problem using the methods proposed in "How-to Guide for Cortical Inflation using FreeSurfer by Susan Mosher Updated May 25, 2005 " . I was able to add the necessary control points which created, as mentioned in the guide,