[Freesurfer] about cortical thickness

Hi: I have run the recon-all command and it finished without error. And now I am interested with the thickness, I want to select a region of interest and get information of every voxel,including the coordinate ,the thickness of this voxel.Also , I want to put these information into a file. Does

Re: [Freesurfer] Core Steps to Inspect

Vina, See this tutorial page: https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/OutputData namely, you use this command: tkmedit brainmask.mgz lh.white \ -aux T1.mgz -aux-surface rh.white \ -segmentation aseg.mgz $FREESURFER_HOME/FreeSurferColorLUT.txt which loads the surfa

[Freesurfer] Core Steps to Inspect

Hello, I used recon-all on my subjects as I didn't expect majority of subjects to have a problem. However, what are the core steps (output images) I should check through for every subject? Thanks, Vina ___ Freesurfer mailing list Freesurfer@nmr.mgh.h

[Freesurfer] about cortical thickness

Hi: I have run the recon-all command and it finished without error. And now I am interested with the thickness, I want to select a region of interest and get information of every voxel,including the coordinate ,the thickness of this voxel.Also , I want to put these information into a file. Does

[Freesurfer] Why surface values differ

Dear Experts, I am going to average data from multiple subjects' surfaces to average surface of my study, obtained by mris_make_average_surface. The problem is that when I am testing this with simply one subject as input: #1 Create surface data for subject 1 mri_vol2surf --src ./DATA.img --sr