Vina, See this tutorial page:
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/OutputData namely, you use this command: tkmedit <subj> brainmask.mgz lh.white \ -aux T1.mgz -aux-surface rh.white \ -segmentation aseg.mgz $FREESURFER_HOME/FreeSurferColorLUT.txt which loads the surfaces creates by recon-all on top of the skull-stripped volume (brainmask.mgz). You would step through the slices to confirm that the pial and white surfaces are correct. Nick On Tue, 2008-08-19 at 13:07 -0500, Vina Goghari wrote: > Hello, > I used recon-all on my subjects as I didn't expect majority of subjects > to have a problem. However, what are the core steps (output images) I > should check through for every subject? > > Thanks, > Vina > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
