Re: [Freesurfer] Monte Carlo Simulation w/ custom design matrix

there should be a fwhm.dat file in the output. doug Jerry Yeou-Wei Chen wrote: Hello, I have a question regarding performing Monte Carlo simulations when a custom design matrix is being used. The wiki says that "For both MC simulations, you must supply the smoothness of your data as Full-Wi

[Freesurfer] Monte Carlo Simulation w/ custom design matrix

Hello, I have a question regarding performing Monte Carlo simulations when a custom design matrix is being used. The wiki says that "For both MC simulations, you must supply the smoothness of your data as Full-Width/Half-Max (FWHM) of the residual. This can be obtained from the ResidualFWHM value

Re: [Freesurfer] qdec error

Here's the last two: ==> /cind/00/FSv4Test/Freesurfer/subjects/average/make_cortex_label.tmp.20230/lh.S_temporal_superior.label <== 161249  -45.309  4.980  -29.869 0.00 161250  -45.807  4.629  -30.666 0.00 161325  -45.049  6.874  -30.794 0.00 161326  -45.879  6.790  -32.199 0.00 1

Re: [Freesurfer] qdec error

what are the last couple of lines of that file? On Thu, 17 Apr 2008, Sky Raptentsetsang wrote: Hi Nick, When I try to load the lh.cortex.label in tksurfer I get the following error print out in the SSh tool window: [EMAIL PROTECTED] subjects]$ tksurfer average lh pial Using Freesurfer versio

Re: [Freesurfer] qdec error

that looks okay. What about the last two lines? On Thu, 17 Apr 2008, Sky Raptentsetsang wrote: Hi Bruce, Here are the first few lines of the lh.cortex.label: #label , from subject ?? 149955 ==>/cind/00/FSv4Test/Freesurfer/subjects/average/make_cortex_label.tmp.20230/lh.G_a nd_S_occipital_inf

Re: [Freesurfer] qdec error

Hi Nick, When I try to load the lh.cortex.label in tksurfer I get the following error print out in the SSh tool window: [EMAIL PROTECTED] subjects]$ tksurfer average lh pial Using Freesurfer version 4.   Subjects Directory is /cind/00/FSv4Test/Freesurfer/subjects   Sessions Directory is /home/sky

Re: [Freesurfer] qdec error

Hi Bruce, Here are the first few lines of the lh.cortex.label: #label , from subject ?? 149955 ==> /cind/00/FSv4Test/Freesurfer/subjects/average/make_cortex_label.tmp.20230/lh.G_and_S_occipital_inferior.label <== 161841  -37.845  -74.578  -13.988 0.00 161842  -37.786  -74.111  -14.300 0.0

Re: [Freesurfer] Qdec on leopard

Alex, On our Mac Leopard Intel and PowerPC test platforms, qdec as found in freesurfer v4.0.3 works. Are you running qdec directly from the terminal? Or via ssh? If through ssh, be sure to include the -Y flag to ssh when connecting. What kind of machine do you have? Intel or PowerPC? What ki

[Freesurfer] Qdec on leopard

Hi, I've just installed version 4.0.3 for leopard and can't open qdec. I get the error below. Any help is appreciated. Alex qdec & [1] 956 [pspc83:MRI_data/freesurfer/subjects_cann] alexfornito% X Error of failed request: BadRequest (invalid request code or no such operation) Major opcode of

Re: [Freesurfer] A question about Local Gyrification index in freesurfer

Hello, You can easily use everything that you processed on the previous version. An easy thing to do that is to install both versions of freesurfer at the same time on your computer, with the newest being installed in / usr/local/freesurfer_version403 on a linux, or in /Applications/ free

[Freesurfer] A question about Local Gyrification index in freesurfer

Dear Mr or Miss: I want to use the local gyrification index in freesurfer. However, my computer was installed with the former edition 4.0.1 without lGI, In order to use the lGI,I have to update the freesurfer software, I want to know whether other codes, for example ,the codes that calculated the

[Freesurfer] LGI : cannot allocate memory

Hello, Do you know why I have a memory problem with LGI ? This is my output: thanks [EMAIL PROTECTED] ~]$ recon-all -lgi -sid chuv60 INFO: SUBJECTS_DIR is /usr/local/freesurfer/subjects Actual FREESURFER_HOME /home/cammoun/freesurfer -rwxrwxrwx 1 root root 620884 Apr 16 08:58 /usr/