Hi Richard,
something is badly wrong with your surface. mris_fix_topology says:
before topology correction, eno=-305 (nv=37379, nf=75536, ne=113220,
g=153)
37379 vertices is not nearly enough. It should be more like 12-16.
Look at the overlay of your orig surface and see what it look
Are the grpahic drivers for lacolombiana up to date?
On Tue, 2007-07-03 at 15:56 -0400, Camilo Lamus wrote:
> Hi Freesurfer help,
>
> I am currently going through the workflow following the recommended
> reconstruction for 4 of my new subjects. I used recon-all scripts fo the
> stages
> 1 and 2
t one thing is wrong, either in my command-line
parameters, or somewhere in the code, because stxgrinder didn't make
any sig files.
Thanks,
Rob
[EMAIL PROTECTED] SUBJECTS_DIR]$ pwd
/space/ventzl/1/users/SUBJECTS_DIR
[EMAIL PROTECTED] SUBJECTS_DIR]$ use_dev
freesurfer-Linux-ce
EMAIL PROTECTED] SUBJECTS_DIR]$ pwd
/space/ventzl/1/users/SUBJECTS_DIR
[EMAIL PROTECTED] SUBJECTS_DIR]$ use_dev
freesurfer-Linux-centos4_x86_64-dev-20070703
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME /usr/local/freesurfer/dev
FSFAST_HOME
or somewhere in the code, because stxgrinder didn't make
any sig files.
Thanks,
Rob
[EMAIL PROTECTED] SUBJECTS_DIR]$ pwd
/space/ventzl/1/users/SUBJECTS_DIR
[EMAIL PROTECTED] SUBJECTS_DIR]$ use_dev
freesurfer-Linux-centos4_x86_64-dev-20070703
Setting up environment f
L PROTECTED] SUBJECTS_DIR]$ use_dev
freesurfer-Linux-centos4_x86_64-dev-20070703
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME /usr/local/freesurfer/dev
FSFAST_HOME /usr/local/freesurfer/dev/fsfast
FSF_OUTPUT_FORMAT nii
SUBJECTS_DIR /space/ve
-Linux-centos4_x86_64-dev-20070703
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME /usr/local/freesurfer/dev
FSFAST_HOME /usr/local/freesurfer/dev/fsfast
FSF_OUTPUT_FORMAT nii
SUBJECTS_DIR /space/ventzl/1/users/SUBJECTS_DIR
MNI_DIR /usr/local/f
L PROTECTED] SUBJECTS_DIR]$ use_dev
freesurfer-Linux-centos4_x86_64-dev-20070703
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME /usr/local/freesurfer/dev
FSFAST_HOME /usr/local/freesurfer/dev/fsfast
FSF_OUTPUT_FORMAT nii
SUBJECTS_DIR /space/ve
#x27;t realize I'm doing wrong?
Thanks,
Rob
[EMAIL PROTECTED] ~]$ cd $SUBJECTS_DIR/
[EMAIL PROTECTED] SUBJECTS_DIR]$ pwd
/space/ventzl/1/users/SUBJECTS_DIR
[EMAIL PROTECTED] SUBJECTS_DIR]$ use_dev
freesurfer-Linux-centos4_x86_64-dev-20070703
Setting up environment for FreeSurfe
_DIR
[EMAIL PROTECTED] SUBJECTS_DIR]$ use_dev
freesurfer-Linux-centos4_x86_64-dev-20070703
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME /usr/local/freesurfer/dev
FSFAST_HOME /usr/local/freesurfer/dev/fsfast
FSF_OUTPUT_FORMAT nii
SUBJECTS_DIR
Hi Boris,
not really. We used to have one called csurf, but it's mostly been
deprecated. There are 2 visualization tools we use, one for volumes
(tkmedit) and one for surfaces (tksurfer).
cheers,
Bruce
On Tue, 3 Jul 2007, Boris Epstein wrote:
Hello everyone,
I am just wondering if there i
Hello everyone,
I am just wondering if there is a "central" GUI to the FreeSurfer - some
sort of a control utility like one finds in many applications, a utility
from which all other functions are called.
Thanks.
Boris.
___
Freesurfer mailing list
you should be able to use COR files as input
On Tue, 3 Jul 2007, Inge K.
Amlien wrote:
Hi,
we are about to reprocess quite a few subjects originally done in 2004. I
am wondering if I will need to dig up the original dicoms, or if I can
convert the COR-files to .mgz.
-In the first study we hav
Hi,
we are about to reprocess quite a few subjects originally done in 2004. I
am wondering if I will need to dig up the original dicoms, or if I can
convert the COR-files to .mgz.
-In the first study we have 2 series converted to orig/001/COR* and
orig/002/COR*.
-In the second study we have only 1
14 matches
Mail list logo
