Are the grpahic drivers for lacolombiana up to date? On Tue, 2007-07-03 at 15:56 -0400, Camilo Lamus wrote: > Hi Freesurfer help, > > I am currently going through the workflow following the recommended > reconstruction for 4 of my new subjects. I used recon-all scripts fo the > stages > 1 and 2. Now I am checking if the surfaces are correct with tkmedit. I have > found a strange behavior with this viewer. When I run: > > tkmedit 010748_8 wm.mgz rh.white -aux brainmask.mgz -aux-surface lh.white, > > It then show the coronal slice 128 and some surfaces are badly position (see > attached image bad_slice_128.tif) with zigzag like surfaces. The funny part is > that I then surf through the volume, and some images are bad and some a > perfect. Then I go back to the coronal slice 128 (see attached image > good_slice_128.tif), and the surfaces are then perfect. And after that all the > surfaces in the volume are position correctly. He is the summary of my error > report: > > Machine: lacolombiana (in the martinos center) > version: source /usr/local/freesurfer/nmr-std-env > SUBJECT_DIR /autofs/space/rao_001/users/patrickp/propofol/ > which tkmedit: /usr/local/freesurfer/stable/bin//tkmedit > Current working directory: > /autofs/space/rao_001/users/patrickp/propofol/010748_8 > Subject: 010748_8 > > This same thing happen with my other 3 subjects: 010748_10, 010748_11, > 010748_112. Then I run tkmedit in machine rao, and the funny behavior > disappeared. Is there anything that you guys can think of that I must modify > in > my machine to fix this? > > Thanks, > > --Camilo > > ----- End forwarded message ----- > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Kevin Teich
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