Hi,
I'm having problems running mkcontrast-sess. More information is shown
further down, but the command I ran was:
mkcontrast-sess -analysis EMerror -contrast AScvfix_6 -a 2 -c 0 -setwdelay
0 0 0 0 0 0 1 0 0 0 0 0
The error was "ERROR: Flag 1 unrecognized."
This is the same syntax I have used before, but it doesn't seem to
work. Was there a change in mkcontrast's flags? Something else I
don't realize I'm doing wrong?
Thanks,
Rob
[EMAIL PROTECTED] ~]$ cd $SUBJECTS_DIR/
[EMAIL PROTECTED] SUBJECTS_DIR]$ pwd
/space/ventzl/1/users/SUBJECTS_DIR
[EMAIL PROTECTED] SUBJECTS_DIR]$ use_dev
-------- freesurfer-Linux-centos4_x86_64-dev-20070703 --------
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME /usr/local/freesurfer/dev
FSFAST_HOME /usr/local/freesurfer/dev/fsfast
FSF_OUTPUT_FORMAT nii
SUBJECTS_DIR /space/ventzl/1/users/SUBJECTS_DIR
MNI_DIR /usr/local/freesurfer/dev/mni
FSL_DIR /usr/local/freesurfer/dev/fsl
[vantz:SUBJECTS_DIR] (nmr-dev-env) echo "0 0 0 0 0 0 1 0 0 0 0 0" |
mkcontrast-sess -analysis EMerror -contrast AScvfix_6 -a 2 -c 0 -setwdelay
INFO: Found 12 Delays
INFO: Found 4 Non-Null Conditions
Condition Weights: 0 1.00000000000000000000 0 0
###################################
### Enter 12 Delay Weights (Return)
mkcontrast -anadir EMerror -wcond 0 1.00000000000000000000 0 0 -sumconds
-o EMerror/AScvfix_6 1 -wdelay 0 0 0 0 0 0 1 0 0 0 0 0 -setwdelay
$Id: mkcontrast,v 1.7 2007/06/13 01:02:48 greve Exp $
ERROR: Flag 1 unrecognized.
-anadir EMerror -wcond 0 1.00000000000000000000 0 0 -sumconds -o
EMerror/AScvfix_6 1 -wdelay 0 0 0 0 0 0 1 0 0 0 0 0 -setwdelay
ERROR running mkcontrast
mkcontrast -anadir EMerror -wcond 0 1.00000000000000000000 0 0 -sumconds
-o EMerror/AScvfix_6 1 -wdelay 0 0 0 0 0 0 1 0 0 0 0 0 -setwdelay
Tue Jul 3 13:22:50 EDT 2007
[vantz:SUBJECTS_DIR] (nmr-dev-env)
--
Robert P. Levy, B.A.
Research Assistant, Manoach Lab
Massachusetts General Hospital
Charlestown Navy Yard
149 13th St., Room 2656
Charlestown, MA 02129
email: [EMAIL PROTECTED]
phone: 617-726-1908
fax: 617-726-4078
http://nmr.mgh.harvard.edu/manoachlab
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