Re: [Freesurfer] question about flattening surfaces

2006-05-31 Thread adam walczak
It's a paint-format image *.w --- Bruce Fischl <[EMAIL PROTECTED]> wrote: > it's supposed to work, although we don't use patches > all that much. You > could load the patch in tksurfer, but loading the > overlay crashed? What > format is the overlay in? > > On Wed, > 31 May 2006, adam walczak

Re: [Freesurfer] question about flattening surfaces

2006-05-31 Thread Bruce Fischl
it's supposed to work, although we don't use patches all that much. You could load the patch in tksurfer, but loading the overlay crashed? What format is the overlay in? On Wed, 31 May 2006, adam walczak wrote: Can you load an overlay on top of a patch. The one that I tried to overlay (whi

Re: [Freesurfer] question about flattening surfaces

2006-05-31 Thread adam walczak
Can you load an overlay on top of a patch. The one that I tried to overlay (which works on the surfaces) crashed tksurfer...so is this possible? Adam --- Nick Schmansky <[EMAIL PROTECTED]> wrote: > there a few notes on flattening at the end of the > recon-all help text. > see the end of: > http

Re: [Freesurfer] question about flattening surfaces

2006-05-31 Thread adam walczak
Thanks...that pretty much answers my question. --- Nick Schmansky <[EMAIL PROTECTED]> wrote: > there a few notes on flattening at the end of the > recon-all help text. > see the end of: > https://surfer.nmr.mgh.harvard.edu/fswiki/recon-all > i don't know if it will help with your problem > though

Re: [Freesurfer] question about flattening surfaces

2006-05-31 Thread Nick Schmansky
there a few notes on flattening at the end of the recon-all help text. see the end of: https://surfer.nmr.mgh.harvard.edu/fswiki/recon-all i don't know if it will help with your problem though. On Wed, 2006-05-31 at 08:38 -0700, adam walczak wrote: > It did something, but I only made one cut and i

Re: [Freesurfer] question about flattening surfaces

2006-05-31 Thread adam walczak
It did something, but I only made one cut and it produced something not looking correctly...it also crashes when I try to load the ROI that I want to overlay. That is the reason I am making the flattened image anyway. adam --- Bruce Fischl <[EMAIL PROTECTED]> wrote: > that sounds about right de

Re: [Freesurfer] question about flattening surfaces

2006-05-31 Thread Bruce Fischl
that sounds about right depending on the size of the patch. Did it work? On Wed, 31 May 2006, adam walczak wrote: about how long should the flattening process take? mris_flatten took about nine hours when I tried it yesterday. adam --- Bruce Fischl <[EMAIL PROTECTED]> wrote: use tksurfer

Re: [Freesurfer] question about flattening surfaces

2006-05-31 Thread adam walczak
about how long should the flattening process take? mris_flatten took about nine hours when I tried it yesterday. adam --- Bruce Fischl <[EMAIL PROTECTED]> wrote: > use tksurfer. > > On Wed, 31 May 2006, adam walczak wrote: > > > Hello, > > > > I was searching through the wiki and ran across a

Re: [Freesurfer] question about flattening surfaces

2006-05-31 Thread Bruce Fischl
use tksurfer. On Wed, 31 May 2006, adam walczak wrote: Hello, I was searching through the wiki and ran across a page that said to use csurf to make full surface cuts in order to ultimately create flattened surfaces. But while perusing the support archives, it was said that csurf is no longer

[Freesurfer] question about flattening surfaces

2006-05-31 Thread adam walczak
Hello, I was searching through the wiki and ran across a page that said to use csurf to make full surface cuts in order to ultimately create flattened surfaces. But while perusing the support archives, it was said that csurf is no longer supported. Is this true? How then do you make the full su