Hi again,
I've been playing around with the other segmentation fault I was getting (stage
1 recon-all with the 3T images). I've noticed that my 1.5T images (with which I
have no problems) are coronally acquired, 256 x 256 x 123 (x, y, z)
, voxel size 0.9 x 0.9 x 1.5, 16 bit.
My 3Ts are 512 x 512
Hi Nick,
Here's the output with the echo command. Thanks for your help.
make_average_surface --echo --subjects 1000186 1000187 1000188 1000189 1000190
1000191 1000192 1000194
if ( 0 ) then
breaksw
end
while ( 9 != 0 )
set flag = --subjects
if ( ! 0 ) then
shift
endif
switch ( --subjects )
if ( 8
The heat kernel sounds cool :). I'll check it out.
doug
Moo K. Chung wrote:
Hi all,
heat kernel smoothing and diffusion smoothing are supposed to give
the same solution to an isotropic heat equation on the cortex. the
difference is that heat kernel smoothing is simpler and there is no
n
Alex,
I'm trying to track down the source of the segmentation fault. In the
meantime, can you re-run the script with the parameter --echo just after
'make_average_surface' (and before the --subjects)? This will give me a
better idea on where its faulting. I don't think the subject naming is
the
Hi all,
heat kernel smoothing and diffusion smoothing are supposed to give
the same solution to an isotropic heat equation on the cortex. the
difference is that heat kernel smoothing is simpler and there is no
need to worry about the convergence. in diffusion smoothing, there
might be a ringing e
Hi Moo,
I actually implemented your diffusion smoother but could not quite get
it to work. It might have been related to the delta t parameter. Can
you give some guidance as to how to set it? What's the difference
between heat kernel smoothing and diffusion smoothing? btw, the link to
the "Dif
Hi Dave,
you make subdirs if you have more than one acquisition of the same
subject that you want to motion correct and average. It's a good idea to
keep the dicom files in an orig/dicom dir so you can always get back to
them. If that's the case, pick 1 file from the dicom series that you wan
Hey guys,
I sent one messge before but it was very vague, but now that I am a
little bit more knowledgeable about what I am doing, let me be more
specific. I have a bunch of images (individual slices) in .dcm format.
What EXACTLY should I type in the command line to convert these to .cor
files?
