Hey guys, I sent one messge before but it was very vague, but now that I am a little bit more knowledgeable about what I am doing, let me be more specific. I have a bunch of images (individual slices) in .dcm format. What EXACTLY should I type in the command line to convert these to .cor files? I've been fiddling with the mri_convert command, and I thought it worked at first, but the files themselves didn't say .cor after I was finished with the "conversion." Also, should I FIRST move the files into an orig directory that I have created, THEN convert them, visa versa, or does it not matter what order I do that in? When I convert the files, I dont know how to convert ALL of the slices in the folder, but I was rather trying to individually convert the files at first, which would take forever. I have gotten several errors wheile trying to convert, but mostly I get ones having to do with the output I am putting into the command.
One more thing. Suppose this converion/moving the files works...I am confused as to why you need to make subdirectories under the orig directory labled 001 002 003. Are there more than just 3 I am supposed to make, and what exactly do I put in these subcategories? Once I get over this road block I should be alright because I was able to do everything properly with the bert file. Thanks. Dave _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
