Re: [Freesurfer] MINC tools for Mac OS X

http://www.bic.mni.mcgill.ca/software/distribution/#osx from the message below (from Vicka earlier this year) might help you. http://www.mail-archive.com/[EMAIL PROTECTED]/ msg00936.html You probably saw Tosa's dependency list earlier today. Knowing that that will probably help you too. Ra

Re: [Freesurfer] (no subject)

Hi, nu_correct is N3 package from MNI. We use two tools from MNI: mni_autoreg and N3. Unfortunately in order to use them, you must have the following list of MNI tools installed. 1. netcdf 2. mni_perllib 3. GetOpt-Tabular Perlmodule 4. Text::Format Perl module (get this from CPAN) 5. minc 6

Re: [Freesurfer] (no subject)

Hi Nam, I'm not sure what to tell you. nu_correct is their script for running John Sled's N3 intensity nonuniformity correction. We have it in our mni_tools directory locally, you must be able to get it from them. cheers, Bruce On Tue, 19 Oct 2004, Joongnam Yang wrote: Hi Bruce, I've checked t

Re: [Freesurfer] (no subject)

Hi Bruce, I've checked the system and found the MNI package is installed. (Someone installed it a while ago) When I did "locate nu_correct" for the error message, there was nothing on "nu_correct". There was a huge directory that includes MNI stuff. So, it is installed but there is NO such thing

Re: [Freesurfer] Label and overlay

Hi Max, I'm not sure what it is you are asking. Can you be more specific? doug > "Calabrese, Massimiliano (NIH/NINDS)" wrote: > > I'm very sorry for the stupid question: > > Which the functions of the labels and overlay, which the goal? > > Give me an example please > > Max > >

[Freesurfer] Label and overlay

Title: Label and overlay     I'm very sorry for the stupid question: Which the functions of the labels and overlay, which the goal? Give me an example please Max ___ Freesurfer mailing list [EMAIL PROTECTED] https://mail.nmr.mgh.harvard

Re: [Freesurfer] MINC tools for Mac OS X

check the website of the Montreal Neurologic Institute. Bruce On Tue, 19 Oct 2004, Kushal Koolwal wrote: hi, Well I am running into some serious problems while running csurf on my Mac machine Can someone suggest a good source where I can download the MIN/MINC tools that are required for runni

[Freesurfer] MINC tools for Mac OS X

hi, Well I am running into some serious problems while running csurf on my Mac machine Can someone suggest a good source where I can download the MIN/MINC tools that are required for running csurf. I mean I want to use the mri_montion_correct utility as mentioned in the Freesurfer tutorial.

Re: [Freesurfer] (no subject)

it looks like you don't have the MNI software installed (nu_correct comes from there) Bruce On Tue, 19 Oct 2004, Joongnam Yang wrote: Hi, I used the following command recon-all -stage1 -subjid blobby and I got the following error message (Please let me know what is wrong with Freesurfer). ---

[Freesurfer] (no subject)

Hi, I used the following command recon-all -stage1 -subjid blobby and I got the following error message (Please let me know what is wrong with Freesurfer). -- copy of the exact error messages --- program versions used $Id: rec

Re: [Freesurfer] Printing or saving TkSurfer image

tools->save RGB as... On Tue, 19 Oct 2004, Margaret Duff wrote: Hello, Does anyone know how to print or save as an image, the infated brain surface as shown using TkSurfer? Thanks, Margaret ___ Freesurfer mailing list [EMAIL PROTECTED] https://mail.nmr.

[Freesurfer] Printing or saving TkSurfer image

Hello, Does anyone know how to print or save as an image, the infated brain surface as shown using TkSurfer? Thanks, Margaret ___ Freesurfer mailing list [EMAIL PROTECTED] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] mri_montion_correct2 utility

Actually, I changed this a few weeks ago. It now creates a temp dir in the output directory, so it should be in the next release. doug Vicka Corey wrote: > > /tmp on a mac is usually a link to /private/tmp, under which each user > will have their own directory (e.g. for me, /private/tmp/corey

Re: [Freesurfer] mri_montion_correct2 utility

/tmp on a mac is usually a link to /private/tmp, under which each user will have their own directory (e.g. for me, /private/tmp/corey). if this is a program we want to support this way we may want to modify the code to handle this in a more mac-compatible way. --vicka On Mon, Oct 18, 2004 at 0

Re: [Freesurfer] mri_montion_correct command not found on Mac OS X

Wow, this is a bit harsh. We had a loaner G5 from Apple for a month or so to do the port, then didn't have a machine with enough RAM to test stuff until early this week. We should have two G5s running recons sometime in the next couple of weeks, and we are showing stuff in the Apple booth at SF

[Freesurfer] Freesurfer download site

Hi I was just going to download Freesurfer again. However, the Freesurfer site I have used previously seem sto be down: http://surfer.nmr.mgh.harvard.edu Do I have the wrong address? I'd be grateful for directions on where to find the latest version now. Thanks, Kristine _