[O] org agenda extensions

2013-01-11 Thread Thomas Alexander Gerds
Dear all with the aim to show properties in custom match views, I have been experimenting with new variables: org-agenda-overriding-agenda-format org-agenda-property-list then, tweaking the function org-scan-tags this enables custom format for the agenda lines, optionally showing properties (wi

Re: [O] org agenda extensions

2013-01-11 Thread Thomas Alexander Gerds
rk for you? Bastien writes: > Hi Thomas, > > Thomas Alexander Gerds writes: > >> with the aim to show properties in custom match views, I have been >> experimenting with new variables: >> >> org-agenda-overriding-agenda-format >> org-agenda-property-

Re: [O] org agenda extensions

2013-01-11 Thread Thomas Alexander Gerds
Hi Bastien thanks for looking into this! I understand your general point of view. however, the proposed changes would only slow down agenda creating if org-agenda-property-list is set, right? also, it certainly requires some insights to write org-agenda-overriding-agenda-format which could displa

Re: [O] org agenda extensions

2013-01-12 Thread Thomas Alexander Gerds
`org-agenda-property-list'. Bastien writes: > Hi Thomas, > > Thomas Alexander Gerds writes: > >> thanks for looking into this! I understand your general point of >> view. however, the proposed changes would only slow down agenda creating >> if org-agend

Re: [O] org agenda extensions

2013-01-12 Thread Thomas Alexander Gerds
Hi Bastien ok. will investigate. thanks for now. Best Thomas Bastien writes: > Hi Thomas, > > Thomas Alexander Gerds writes: > >> I feel that your proposal to first create the agenda using the standard >> `org-agenda-format-item' function and then to replace all

[O] help regarding babel to set in-buffer specific keybinding

2012-02-07 Thread Thomas Alexander Gerds
here is a (beginner) question regarding the following org-file with buffer-local function and keybinding: , | | * Lisp header (C-c C-c to activate) | #+BEGIN_SRC emacs-lisp | (defun blue-file () | (interactive) | (org-table-insert-row 'below) | (org-table-goto-column 1) |

Re: [O] help regarding babel to set in-buffer specific keybinding

2012-02-08 Thread Thomas Alexander Gerds
this works. thanks for the hint! Eric Schulte writes: > Thomas Alexander Gerds writes: > >> here is a (beginner) question regarding the following org-file with >> buffer-local function and keybinding: >> >> , >> | >> | * Lisp header (C-c C-

[O] worg access source

2012-02-09 Thread Thomas Alexander Gerds
in worg it would be great if (as in emacs muse) there was a link to the underlying .org file which was used to generate the page. my naiive attempt to catch a glimpse of the source of http://orgmode.org/worg/org-contrib/babel/languages/ob-doc-R.html was to browse-url http://orgmode.org/worg/org

[O] issue with babel R evaluate session vs external process

2012-02-09 Thread Thomas Alexander Gerds
still a beginner, and maybe therefore, in my setup (release is: 7.8.03, emacs 23.2.1) the following occurs -org.snip--- * here it works: org-ctrl-c-ctrl-c and export #+begin_src R :results output :exports results foo=matrix(1:2) foo #+end_src #+RESULTS: :

Re: [O] worg access source

2012-02-09 Thread Thomas Alexander Gerds
: > On Thu, Feb 09 2012, Thomas Alexander Gerds wrote: > >> in worg it would be great if (as in emacs muse) there was a link to > the >> underlying .org file which was used to generate the page. my naiive >> attempt to catch a glimpse of the source of >> >> ht

Re: [O] orgmode and auctex

2012-02-09 Thread Thomas Alexander Gerds
Hi Chris, maybe I cannot follow exactly what you are trying to do, but when I start emacs -q and evaluate (setq-default TeX-master nil) and then open a new file test.tex, then I get the same prompt "Master file:". so maybe, if you do not want to get prompted, you could try setting (setq-default

[O] babel bugs??

2012-02-23 Thread Thomas Alexander Gerds
Dear Babel developers I may have found two bugs (org-mode: 7.8.03 release_7.8.03.330.gc804.dirty), emacs: 23.2.1): 1. when I have case-fold-search set to nil, I get problems with the begin/end src notation: , lower case works as expected | | #+begin_src emacs-lisp :results list | (mapcar

Re: [O] \section*{}

2012-02-24 Thread Thomas Alexander Gerds
but, you can always do this: , | ** sec 1 | | bla | | #+LaTeX: \section*{sec2} ` Tomy Marvin Doyley writes: > Thanks nick, > > Can I use this to suppress the numbering selectively > For example, lets say I have > > * Intro > * Results > * Figures and Tables > > Can I use this to su

Re: [O] issue with babel R evaluate session vs external process

2012-03-12 Thread Thomas Alexander Gerds
finally I found the problem: it was not at all related to org or babel, but due to a function in my ess-send-input-hook. sorry for bothering :) Thomas Alexander Gerds writes: > still a beginner, and maybe therefore, in my setup (release is: > 7.8.03, > emacs 23.2.1) the followi

[O] orgmode latex export: reference to label rather than section

2012-06-18 Thread Thomas Alexander Gerds
Hi I would be grateful if someone could help me sort out my confusion regarding references to headings (sections) in latex export. I am used to latex section labels and references via reftex, e.g. , | \section{This is a test} | \label{sec:testit} | | In Section \ref{sec:testit} ` To a

[O] can babel results show time of evaluation?

2013-01-28 Thread Thomas Alexander Gerds
hi I would like to overlay the hash info in results lines of this type #+RESULTS[6e22789c4866716ffb3d0966cbb07c80cacf2d3c]: [1] 1 by a description which shows the evaluation time, e.g. like this #+RESULTS[[6e22789c4866716ffb3d0966cbb07c80cacf2d3c][ evaluated 2013-01-28 Mon 09:33]]: as far as

Re: [O] can babel results show time of evaluation?

2013-01-30 Thread Thomas Alexander Gerds
help to learn how caching works. Cheers Thomas Bastien writes: > Hi Thomas, > > Thomas Alexander Gerds writes: > >> (when hash (concat "[["hash"][" (with-temp-buffer >> (org-insert-time-stamp (current-time) 'hm)) "]]")) >>

Re: [O] can babel results show time of evaluation?

2013-01-30 Thread Thomas Alexander Gerds
Hi Eric yes, it is in line 178 the call to (defcustom org-babel-load-languages '((emacs-lisp . t)) ... which seems to need `org-ts-regexp' but, otherwise it works! Thank you very much for this option. Best Thomas Bastien writes: > Hi Eric, > > Eric Schulte writes: > >> I've just pushed

[O] latex listings number-lines problems with new exporter

2013-03-05 Thread Thomas Alexander Gerds
Hi using org-mode "7.9.3f" and the new exporter I was desperately trying to get line numbers back for exported R code blocks using the latex listing package. first I tried (setq org-latex-listings-options '(("basicstyle" "\\small") ("numbers" "left"))) which gives , | \lstset{bas

Re: [O] latex listings number-lines problems with new exporter

2013-03-05 Thread Thomas Alexander Gerds
thanks for the fast fix. now, I agree that there is no great need to put a link into the doc-string of org-latex-listings-options. Nicolas Goaziou writes: > Hello, > > Thomas Alexander Gerds writes: > >> using org-mode "7.9.3f" and the new exporter I was despe

[O] minor bug in babel with silent output and remote R session

2013-03-13 Thread Thomas Alexander Gerds
Using the silent option together with a remote R session block (started via ssh.el and ess-remote), like this: #+BEGIN_SRC R :results silent :exports results :session *ssh gauss* :cache yes a=1 1 #+END_SRC produces: , | > > > [1] 1 | > Warning message: | In file.rename(tfile, transfer.f

Re: [O] minor bug in babel with silent output and remote R session

2013-03-13 Thread Thomas Alexander Gerds
/babel-8270IwX/R-8270vVe', reason 'No such file or directory' | > a=1 | 1 | 'org_babel_R_eoe' | a=1 | > 1 | [1] 1 | > 'org_babel_R_eoe' | [1] "org_babel_R_eoe" | > ` cheers Thomas Eric Schulte writes: > Thomas Alexander Gerds

[O] latex figure scaling question, backward compatibility and outdated manual

2013-03-19 Thread Thomas Alexander Gerds
the following page from the official manual http://orgmode.org/manual/Images-in-LaTeX-export.html says #+ATTR_LaTeX: width=5cm,angle=90 however, the new exporter does not recognize this syntax. instead the following works: #+ATTR_LaTeX: :width 5cm I was learning about this by guessing arou

Re: [O] latex figure scaling question, backward compatibility and outdated manual

2013-03-20 Thread Thomas Alexander Gerds
sorry for this post. I should have read the mailing list more carefully. looks as if a) the issue is already under discussion and b) that the manual is for latest release whereas I had problems with the pre-release. Thomas Alexander Gerds writes: > the following page from the official man

Re: [O] latex figure scaling question, backward compatibility and outdated manual

2013-03-22 Thread Thomas Alexander Gerds
thanks for the reply! when edebugging the function org-export-read-attribute it is unclear to me which function generates (the text properties of) element. do you have a script which translates from old syntax to new? thanks. Nicolas Goaziou writes: > Hello, > > Thomas Alexan

Re: [O] minor bug in babel with silent output and remote R session

2013-04-09 Thread Thomas Alexander Gerds
is end let me note that there are at least two ways to start a remote R session in emacs: 1) M-x shell 2) M-x ssh via ssh.el (not part of emacs) Cheers Thomas Bastien writes: > Hi Thomas, > > Thomas Alexander Gerds writes: > >> Using the silent option together with a remote

[O] org babel problems with (org-babel-read "*R*")

2013-04-09 Thread Thomas Alexander Gerds
after upgrading to the latest bleeding edge version I have problems executing org-babel R blocks where the session is named *R*. the error is this: ELISP> (org-babel-read "*R*") *** Eval error *** Symbol's value as variable is void: *R* did I miss any conventions or is this a bug? cheers thoma

Re: [O] org babel problems with (org-babel-read "*R*")

2013-04-10 Thread Thomas Alexander Gerds
works again. thanks very much for fixing this so quickly! Eric Schulte writes: > Charles Berry writes: > >> Thomas Alexander Gerds biostat.ku.dk> writes: >> >>> >>> >>> after upgrading to the latest bleeding edge version I have problems &g

Re: [O] minor bug in babel with silent output and remote R session

2013-04-14 Thread Thomas Alexander Gerds
th the efforts and it would be sufficient to avoid the endless loop when waiting for a file which never will generated. cheers thomas Eric Schulte writes: > Bastien writes: > >> Hi Thomas, >> thanks for the follow-up. >> Thomas Alexander Gerds writes: >> >>>

Re: [O] minor bug in babel with silent output and remote R session

2013-04-15 Thread Thomas Alexander Gerds
l from the Babel > source if the R session is remote? > > Thanks, > > Thomas Alexander Gerds writes: > >> yes, I am using ESS. ess-remote allows me to evaluate R-code from >> the local emacs-session on a remote machine connected to via ssh. >> there are two prob

Re: [O] Latex export of tables

2013-04-16 Thread Thomas Alexander Gerds
Hi Vikas I am not sure I understand the problem correctly, but how about this? Here is a table produced by a R-src block with some descriptive text in a minipage: ---snip-- #+BEGIN_SRC R :results output latex :exports results :s

[O] proposed change of org-gnus-store-link for nnir groups

2015-12-12 Thread Thomas Alexander Gerds
sometimes after searching for mail with notmuch, I want to save a link to one of the articles shown in the nnir summary. since nnir groups are temporary I would like org-gnus-store-link to treat nnir groups differently and to use the articles orginal group when creating the link. the following 3 l

Re: [O] proposed change of org-gnus-store-link for nnir groups

2015-12-16 Thread Thomas Alexander Gerds
t; Hello, > > Thomas Alexander Gerds writes: > >> sometimes after searching for mail with notmuch, I want to save a >> link to one of the articles shown in the nnir summary. since nnir >> groups are temporary I would like org-gnus-store-link to treat nnir >> groups differen

Re: [O] proposed change of org-gnus-store-link for nnir groups

2015-12-17 Thread Thomas Alexander Gerds
yes, I now found the "how to contribute" page :) the updated patch is attached. thanks! Nicolas Goaziou writes: > Hello, > > Thomas Alexander Gerds writes: > >> great. the updated patch is attached. > > It looks good. Thank you. One mino

[O] export of src block ignores :results

2016-09-28 Thread Thomas Alexander Gerds
Hi org's development version (I am using the one updated yesterday: 2b22d50 Nicolas Go 2016-09-28) seems to ignore the :results setting of a src block. more specifically, the export of this #+BEGIN_SRC R :results output :exports code :session *R* :cache yes 2+2 #+END_SRC #+RESULTS[<2016-09-29

[O] export of src block ignores :results

2016-09-28 Thread Thomas Alexander Gerds
Hi org's development version (I am using the one updated yesterday: 2b22d50 Nicolas Go 2016-09-28) seems to ignore the :results setting of a src block. more specifically, the export of this #+BEGIN_SRC R :results output :exports code :session *R* :cache yes 2+2 #+END_SRC #+RESULTS[<2016-09-29

Re: [O] export of src block ignores :results

2016-09-29 Thread Thomas Alexander Gerds
export process where the :results option is interpreted? Thomas "Charles C. Berry" writes: > On Thu, 29 Sep 2016, Thomas Alexander Gerds wrote: > >> Hi >> org's development version (I am using the one updated yesterday: >> 2b22d50 Nicolas Go 2016-09-28) seems

Re: [O] export of src block ignores :results

2016-09-29 Thread Thomas Alexander Gerds
code" persists when I set (setq org-babel-hash-show-time nil) so, unfortunately my question remains. which function in the export process interprets the "results code" option? Thomas "Charles C. Berry" writes: > On Thu, 29 Sep 2016, Charles C. Berry wrote: > >

Re: [O] export of src block ignores :results

2016-09-30 Thread Thomas Alexander Gerds
ry" writes: > On Thu, 29 Sep 2016, Thomas Alexander Gerds wrote: > >> > [deleted] > > Follow the advice in the docstring for > `org-export-babel-evaluate'. Use `:eval never-export'. Set > org-export-babel-evaluate to t. > > Chuck > > -- sent from nil

Re: [O] export of src block ignores :results

2016-10-02 Thread Thomas Alexander Gerds
again for your help and patience! Thomas "Charles C. Berry" writes: > On Fri, 30 Sep 2016, Thomas Alexander Gerds wrote: > >> right, this is what changed and setting :eval never-export on a each >> block solves the problem. however, the new way breaks all my >