Errors in Install and examples

2018-01-21 Thread Don Flinn
Hi, I'm new toctakes. I installed the system as per the cTakes 4.0 Developer install Guide into eclipse running on Windows 10. It mostly went well. However, there were errors in the build for the ctakes-ytexs in the pom.xml elements. It said 'don't panic" so I'm not -:). However, due my novic

Re: Errors in Install and examples [EXTERNAL]

2018-01-22 Thread Don Flinn
es-clinical-pipeline-res. "Ts" stands for > thread-safe and you can find Ts piper files throughout the ctakes *-res > projects. > > You can check progress /comments at this jira item (ctakes-485): > https://issues.apache.org/jira/browse/CTAKES-485?jql= > project%20%

Trying to Understand cTAKES

2018-02-27 Thread Don Flinn
HI, I'm new to cTAKES and am trying to understand the product. One of my goals is to read in medical research documents in a given medical domain, glean semantic information from them and put the information into a database, which I can query. I have run through the cTAKES examples and they seem

Re: Trying to Understand cTAKES [EXTERNAL]

2018-02-27 Thread Don Flinn
y/CTAKES/ > Default+Clinical+Pipeline > > Sean > > > -Original Message- > From: Don Flinn [mailto:fl...@alum.mit.edu] > Sent: Tuesday, February 27, 2018 4:16 AM > To: dev@ctakes.apache.org > Subject: Trying to Understand cTAKES [EXTERNAL] > > HI, > I'm new t

Trying to install dictionary

2018-03-08 Thread Don Flinn
I'm using cTakes dev and am attempting to install the org/apache/ctakes/dictionary/lookup/fast dictionary, but can not find the instructions. I've downloaded sno_rx_16ab.zip. There is a script in the zip file. Where are the how to instructions? Do I just blindly run the script? I do have my e

Re: Trying to install dictionary [EXTERNAL]

2018-03-12 Thread Don Flinn
contents of the .zip file so that they are in the ctakes > resources/org/apache/ctakes/dictionary/lookup/fast/ directory. > > Sean > > From: Don Flinn > Sent: Friday, March 9, 2018 2:10 AM > To: dev@ctakes.apache.org > Subject:

lvg.properties file error

2018-03-17 Thread Don Flinn
I'm getting the following error: ** Configuration Error: file:\apache-ctakes-4.0.0Dev\resources\org\apache\ctakes\lvg\data\config\lvg.properties (The filename, directory name, or volume label syntax is incorrect) ** Error: problem of opening/reading config file: 'file:/apache-ctakes-4.0.0Dev/resour

Re: lvg.properties file error

2018-03-19 Thread Don Flinn
es in config files. > > Sean > > -Original Message- > From: Don Flinn [mailto:fl...@alum.mit.edu] > Sent: Saturday, March 17, 2018 7:06 AM > To: dev@ctakes.apache.org > Subject: lvg.properties file error > > I'm getting the following error: > ** Configu

Getting CTakes to work with Windows

2018-03-29 Thread Don Flinn
Last time I was here my problem was the error: ** Configuration Error: file:\apache-ctakes-4.0.0Dev\resources\org\apache\ctakes\lvg \data\config\lvg.properties (The filename, directory name, or volume label syntax is incorrect) ** Error: problem of opening/reading config file: 'file:/apache-ctakes

Update to Getting cTAKES to work with windows

2018-03-31 Thread Don Flinn
Note that I'm a newbee with cTAKES so please take what I say/write with a grain of salt. After obtaining the lvg.propertes file, as per my previous mail, 'Getting cTAKES to work with windows', I made the following change in that file, setting the LVG_DIR to: . LVG_DIR=/apache-ctakes-4.0.0Dev/ctak

Parse Medical Research Papers

2018-06-18 Thread Don Flinn
I want to parse medical research papers and am looking at using Ctakes. I do realize that Ctkes is aimed at Clinical Reports, but I would like to see if I can use it for my purposes. I'm initially looking to get a tuple of Subject, Predicate, Object for each sentence and later additional semantic