Sean, Thank you for the info on the dictionary. The next problem is with the LVG properties. I'm receiving the following errors: ** Configuration Error: file:\C:\apache-ctakes-4.0. 0Dev\ctakes\ctakes-lvg-res\target\classes\org\apache\ ctakes\lvg\data\config\lvg.properties (The filename, directory name, or volume label syntax is incorrect) ** Error: problem of opening/reading config file: 'file:\C:\apache-ctakes-4.0.0Dev\ctakes\ctakes-lvg-res\ target\classes\org\apache\ctakes\lvg\data\config\lvg.properties'. Use -x option to specify the config file path. ** Configuration Error: file:\C:\apache-ctakes-4.0. 0Dev\ctakes\ctakes-lvg-res\target\classes\org\apache\ ctakes\lvg\data\config\lvg.properties (The filename, directory name, or volume label syntax is incorrect) ** Error: problem of opening/reading config file: 'file:\C:\apache-ctakes-4.0.0Dev\ctakes\ctakes-lvg-res\ target\classes\org\apache\ctakes\lvg\data\config\lvg.properties'. Use -x option to specify the config file path.
The properties file is in the right place but the something is wrong with the syntax. I'm not sure what it needs or how to feed it. As the docs said this is necessary to run at a reasonable pace. My first run of ClinicalPipelineFactory.java took multiple hours. Thankfully subsequent runs went reasonably fast. What do I need to add to or modify lvg.properties. Again a pointer to documentation would be appreciated. I also had problems with the batch file but I'm more interested in the java code. The problem output there was: Mar 12, 2018 5:00:33 PM org.apache.uima.util.MessageReport decreasingWithTrace(51) WARNING: Message count: 1; Feature org.apache.ctakes.typesystem.type.textsem.Predicate:relations is marked multipleReferencesAllowed=false, but it has multiple references. These will be serialized in duplicate. Message count indicates messages skipped to avoid potential flooding. Set FINE logging level for stacktrace. Mar 12, 2018 5:00:33 PM org.apache.uima.util.MessageReport decreasingWithTrace(51) WARNING: Message count: 2; Feature org.apache.ctakes.typesystem.type.textsem.Predicate:relations is marked multipleReferencesAllowed=false, but it has multiple references. These will be serialized in duplicate. Message count indicates messages skipped to avoid potential flooding. Set FINE logging level for stacktrace. Mar 12, 2018 5:00:33 PM org.apache.uima.util.MessageReport decreasingWithTrace(51) WARNING: Message count: 4; Feature org.apache.ctakes.typesystem.type.textsem.Predicate:relations is marked multipleReferencesAllowed=false, but it has multiple references. These will be serialized in duplicate. Message count indicates messages skipped to avoid potential flooding. Set FINE logging level for stacktrace. Mar 12, 2018 5:00:33 PM org.apache.uima.util.MessageReport decreasingWithTrace(51) WARNING: Message count: 8; Feature org.apache.ctakes.typesystem.type.textsem.Predicate:relations is marked multipleReferencesAllowed=false, but it has multiple references. These will be serialized in duplicate. Message count indicates messages skipped to avoid potential flooding. Set FINE logging level for stacktrace. Thanks Don On Fri, Mar 9, 2018 at 9:13 AM, Finan, Sean < sean.fi...@childrens.harvard.edu> wrote: > Hi Don, > > Oh yes - the file extension ".script" is a bit misleading. You don't need > to execute anything. > > We really gloss over it here https://cwiki.apache.org/ > confluence/display/CTAKES/cTAKES+4.0+User+Install+Guide > but basically: > > Copy the contents of the .zip file so that they are in the ctakes > resources/org/apache/ctakes/dictionary/lookup/fast/ directory. > > Sean > ________________________________________ > From: Don Flinn <fl...@alum.mit.edu> > Sent: Friday, March 9, 2018 2:10 AM > To: dev@ctakes.apache.org > Subject: Trying to install dictionary [EXTERNAL] > > I'm using cTakes dev and am attempting to install the > org/apache/ctakes/dictionary/lookup/fast dictionary, but can not find the > instructions. I've downloaded sno_rx_16ab.zip. There is a script in the > zip file. Where are the how to instructions? Do I just blindly run the > script? I do have my environment variables set up. > > Thanks for any advice > Don >
