Hi Sean,
I agree with your point on ytex-web as this module has inconsistent build
failures in most of the releases. It needs a major overhaul or it needs to
be shelved.
+1
On Mon, 6 May 2024 at 19:18, Finan, Sean
wrote:
> Hi Peter,
>
> Thanks again for testing. I didn't have a problem with t
hrough next Monday evening.
>
> Before the 6.0.0 release I will put some Release Manager information in
> the wiki. The maven release process using a GitHub repo requires a little
> trick that took me a long time to figure out, and the pre-release testing
> deserves some recorded d
x27;t
> know what might be causing them.
>
> Sean
>
>
> From: gandhi rajan
> Sent: Tuesday, April 30, 2024 11:18 AM
> To: dev@ctakes.apache.org
> Subject: Re: Please test the Apache cTAKES 5.1.0 release candidate
> [EXTERNAL]
>
> * Ext
-fae (Fail at end) It will go
> through the rest of the build and only show failures then
> Peter
>
> On Mon, Apr 29, 2024 at 12:29 PM gandhi rajan
> wrote:
>
> > HI Peter,
> >
> > Thanks for the insights. I tried to debug from AppMain.java and it
> >
ith the mysql database
> it
> > was trying to configure. You could put some debugging statements in
> there
> > to see which one.
> >
> > Peter
> >
> > On Mon, Apr 29, 2024 at 4:55 AM gandhi rajan
> > wrote:
> >
> >> Thanks for the ins
can find a way to run that surefire test in the
> debugger, you can find out why it's failing on one of the assertions.
> Otherwise you can take this shortcut
>
> mvn -Dmaven.test.skip=true
>
> To build the project without running any tests.
>
> On Sat, Apr 27, 2024 at 7:3
Hi Sean,
When I tried to build the complete ctakes suite, i get build failure for
ctakes-ytex module with the following error:
[ERROR] Failed to execute goal
org.apache.maven.plugins:maven-antrun-plugin:3.1.0:run
(generate-test-config) on project ctakes-ytex: An Ant BuildException has
occured: Th
but it will happen.
>
> Thanks,
> Sean
>
>
> From: gandhi rajan
> Sent: Wednesday, January 24, 2024 9:12 AM
> To: dev@ctakes.apache.org
> Subject: Re: Build issues today [EXTERNAL]
>
> * External Email - Caution *
>
>
> HI Sean,
>
> This seems to be the sam
HI Sean,
This seems to be the same issue which I discussed with you and Peter
sometime last month that the fresh build and install is broken with version
5.0.0. It needs some tweaking to make it work.
On Wed, 24 Jan 2024 at 02:47, Finan, Sean
wrote:
> Thank you for the heads-up.
> _
> or change your existing ones?
>
> Peter
>
> On Mon, Nov 27, 2023 at 5:45 PM gandhi rajan
> wrote:
>
> > Hi Sean/Peter,
> >
> > Thanks for the insights. As Sean mentioned, I do have the root pom.xml
> > changes in my codebase as well. But in my settin
t;
> >
> > Have you already tried doing it?
> >
> > For the model.jars it seems they are just brought to your local maven
> repo
> > from maven.apache.org.
> > Then a goal called unpack-dependencies copies the relevant files into
> your
> > buil
org/maven2%7Csources=1700255007489>
>
> I'm not a maven export, but perhaps where you're located (inside an
> organization?) you cannot access these addresses, or they need to be put in
> a whitelist somewhere? Sean might know.
>
> Sorry about the confusion. Mave
*mvn --offline package* (to see if the relevant
> > dependencies are already present)
> >
> > and send me the output.
> >
> >
> >
> > On Sun, Nov 26, 2023 at 6:30 PM gandhi rajan
> > wrote:
> >
> >> hi Peter,
> >>
>
when you built using --offline
>
> Peter
>
> On Sun, Nov 26, 2023 at 6:00 PM gandhi rajan
> wrote:
>
> > Hi Peter,
> >
> > I am not using any IDE to build the project. I just used git bash to pull
> > the project from https://github.com/apache/ctakes to l
uilt and therefore any succeeding component also dependent on core will
> > also fail. Check your build log and see if it doesn't mention the
> > "contexttokenizer"
> >
> > I will be checking in a fix. A bunch of files, in the next day or so.
> >
Hi Peter,
I tried building the ctakes project from https://github.com/apache/ctakes
out of curiosity to check on this issue. But I am hitting on a different
issue in building ctakes-core module. The error is "Could not resolve
dependencies for project org.apache.ctakes:ctakes-core:jar:5.0.0-SNAPS
hoping that we can release what is in the GitHub repo as it is right
> now, save for bug fixes.
>
> I will try to keep your spring boot idea on my radar for a version 6
> upgrade. Would you be able to help with that?
>
> Thanks,
> Sean
>
> ____
&
Hi Sean,
One area I could think of is to transform ctakes web rest module from
traditional spring framework to spring boot framework which can enable the
end users to bootstrap the REST API easily and test the same which could
improve the overall adoption rate without major complexity.
On Thu, 10
Hi Sean,
I would love to see cTAKES upgrading to latest tech stack starting from
JAVA 11. I can spend some time on this with some guidance.
On Thu, 18 May 2023 at 08:32, Finan, Sean
wrote:
> Before anybody asks:
>
> We as a community do want to update ctakes to be a 21st century
> application.
We push on with a release of cTAKES 5.0 and release in the current
> style.
> 2. We wait a couple of months until the Apache Infrastructure team has
> the new Artifact Distribution Platform ready and use it to release.
>
> For #1 please keep in mind that we still haven't had a
Hi Sean,
I can volunteer for co-RM so that I can work under your guidance. Thanks.
On Tue, 21 Feb 2023 at 03:43, Finan, Sean
wrote:
> Hi all,
>
> The cTAKES Project Management Committee has voted that it is time to
> officially begin the release process for cTAKES 5.0
>
> It has been almost 6 y
The code repo was recently moved from Subversion to GitHub. As of now, the
active development is in GitHub as far as I know.
On Tue, 7 Feb 2023 at 21:19, Rick Coleman wrote:
> Hi all,
>
> I was reading the last post, subject:
> "[GitHub] [ctakes] Haags commented on issue #8: Issue clean install
Hi Sean,
Most of the GitHub projects in general have issues enabled. I would also
propose enabling Github discussions as well. This helps to keep the
discussions close to the code and it also helps to convert discussions to
issues and vice versa. Please let us know your thoughts.
On Tue, 3 Jan 20
Great news Sean. Much appreciated. Happy new year.
On Saturday, December 31, 2022, Finan, Sean
wrote:
> Hi all,
>
> I am pleased to announce that the cTAKES source code is now on GitHub at
> https://github.com/apache/ctakes
> [https://opengraph.githubassets.com/fcab5fb05ec83aeb556ec2e939a856
> d
Hi Sean,
If we are sure that the SVN has all the latest changes and active
development is primarily on SVN, then why don't we request a fresh git
repository and push all the changes over there.
More info on https://infra.apache.org/svn-to-git-migration.html
On Thu, Jun 2, 2022 at 5:52 PM Finan,
You are right Peter. The latest changes are getting into Apache SVN
repository and this repo is very much active according to me.
On Thu, Jul 29, 2021 at 9:51 PM Peter Abramowitsch
wrote:
> Hi Ben,
>
> I can only speak for myself, but I am using cTakes extensively at two major
> California Unive
You can also spin up multiple rest containers to balance your incoming load
and still let them talk to the same mysql DB that contains dictionary
details for better performance.
On Thu, Mar 25, 2021 at 10:47 PM Peter Abramowitsch
wrote:
> I did a different implementation in my own rest service w
Hi Sean,
After moving the source code to directly under C:\ctakes folder it worked.
On Thu, Mar 18, 2021 at 6:10 PM Finan, Sean <
sean.fi...@childrens.harvard.edu> wrote:
> ?That looks like a fun little ms windows problem.
>
>
>
>
> AppData\Local\Packages\Microsoft.Windows.Search_cw5n1h2txyewy
ry building can be containerized that might be a nice next step
> for better performance of the container.
> Tim
>
>
> On Thu, 2021-02-25 at 20:33 +0530, gandhi rajan wrote:
> > * External Email - Caution *
> >
> >
> > Hi Peter,
> >
> > Noticed a similar be
Hi Peter,
Noticed a similar behavior while working on cTAKES REST module. The
in-memory HSQL in my case was stressing the application server memory and
ended up slowing down the process whereas mysql performed better. Also
the engine you use in MySQL matters as well.
We did a testing on MySQL bas
Hi John,
Check this out - https://youtu.be/pBB4_lycmrw
On Thu, Feb 18, 2021 at 11:59 PM JOHN R CASKEY
wrote:
> Hello,
> I need to create a local UMLS installation that will run cTAKES offline.
> I’m aware of the licensing rules, and have created an account at UTS. I
> looked through dev email a
d start with is about how to obtain your API key.
>
> Peter
>
> On Wed, Nov 25, 2020 at 3:47 PM gandhi rajan
> wrote:
>
> > Hi Sean,
> >
> > Can pick up wiki update if I could get some guidance on what exactly need
> > to be updated and will proceed f
documentation available only on your private (web)
> directory or do you have it someplace publicly available?
>
> Many thanks,
> Sean
>
>
>
> From: gandhi rajan
> Sent: Tuesday, November 24, 2020 1:06 PM
> To: dev@ctakes.apac
I agree with Sean. Its high time to churn out ctakes 5.0.0 and move forward.
On Wed, Nov 25, 2020 at 3:28 AM Finan, Sean <
sean.fi...@childrens.harvard.edu> wrote:
> I think that trunk has enough new stuff to warrant a major release.
>
> I am sure that I am missing quite a few things, but some cl
Hi Sean,
I can take up a few things if you can guide me on the same.
On Tue, Nov 24, 2020 at 9:59 PM Finan, Sean <
sean.fi...@childrens.harvard.edu> wrote:
> Hi Tim and all,
>
> Peter kindly checked this into trunk last week.
> I tested that version and it seemed to work.
>
> Another question mi
This is big news. Looking forward to the event. Glad to be associated with
this project.
On Mon, Sep 21, 2020 at 6:15 PM Finan, Sean <
sean.fi...@childrens.harvard.edu> wrote:
> Hi all,
>
>
> I am pleased to announce that ctakes has enough presentations to warrant
> its own track.
>
>
> The track
Hi Peter,
However I must be missing some bit of information on the use of mmsys or
the dictionary creator, because some very common terms are missing from my
dictionary but present in the released sno_rx
>>> Do you mean the entries are missing in your database? When I tried the
latest UMLS instal
Hi Peter,
We can work together on this if you are interested.
On Fri, Jul 31, 2020 at 7:44 PM Peter Abramowitsch
wrote:
> I could do it while the experience is fresh, although I only know the happy
> path and not the deeper details in this area of the suite
> If you want me to, let me know how
Hi Peter,
To add more info, step by step info on UMLS installation is available in
the link -
http://blog.appliedinformaticsinc.com/getting-started-with-metamorphosys-the-umls-installation-tool/
Once installed, refer -
https://cwiki.apache.org/confluence/display/CTAKES/Dictionary+Creator+GUI
and
Hi Sean,
Would love to help you out if you think I can be handy in any area. Do keep
me posted.
On Mon, Jun 29, 2020 at 8:33 PM Finan, Sean <
sean.fi...@childrens.harvard.edu> wrote:
> Hi all,
>
>
> General admission to ApacheCon 2020 is free:
> https://hopin.to/events/apachecon-home
>
>
> I thi
Hi Honey,
As far as I remember, there are two options in invocation of ctakes Rest
Api. The default one run through the basic pipers but the full option may
probably run through all the pipers which you are looking for. Please check
this out.
On Friday, June 5, 2020, Honey gandhi
wrote:
> Hi
>
>
Hi Akram,
I would prefer to have a look at the following link:
https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+4.0+User+Install+Guide
And for loading custom dictionaries you gotta look at the following link:
https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+4.0+Dictionaries+and+
Hi Akram,
If you could share the error trace, it would be more helpful for others to
narrow down the issue. Also please brief the steps you followed.
On Sunday, December 8, 2019, Akram wrote:
>
> I have been trying to install cTAKES for 2 weeks on Windows 10 through
> IntelliJ and Eclipse with
Hi Carolina,
Here is my two cents on this issue.
As per the first look and your description, it looks like an permission
issue with Windows OS. The application is unable to create the lock file
for Hsqldb. You have to fix the permissions on the ctakes project folder
with read and write access. Es
Hi Greg, Can you check you pom.xml and see if you have enabled any
sonarqube related profile Iin build?
On Sunday, September 29, 2019, Greg Silverman wrote:
> Trying to do the maven build and getting the following error: "You're not
> authorized to execute any SonarQube analysis. Please contact
Glad to hear that Sean. Wish you all the best and keep us posted.
On Thursday, September 12, 2019, Finan, Sean <
sean.fi...@childrens.harvard.edu> wrote:
> Hi all,
>
>
> I will be attending ApacheCon Europe https://aceu19.apachecon.com. If
> anybody is interested in getting together for a cTAKES
Hi Sebastien,
You can refer to this file -
https://svn.apache.org/repos/asf/ctakes/trunk/ctakes-web-rest/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/customDictionary.xml
for custom dictionary configuration.
On Saturday, August 24, 2019, Sébastien Boussard wrote:
> I am now gettin
builder.run();
> // Log the IdentifiedAnnotation object information
> LOGGER.info( "\n" +
> EntityCollector.getInstance().toString()
> );
> } catch ( IOException | UIMAException multE ) {
&
As far as I know, it's a more generic error. Could you please let us know
what action you are trying to perform and steps involved in reproducing the
issue.
On Saturday, August 10, 2019, Sebastien Boussard wrote:
> Hello,
> I’m an intern in the Stanford Biomedical Informatics Lab and I've been
>
Hi Maral,
cTAKES don't support name recognition out of the box. I had a similar
question earlier and Sean responses that cTAKES don't support this. Please
check dev mailing list archives for more info on this.
On Thursday, August 8, 2019, Maral Amir wrote:
> Hi,
>
> I hope everyone is having a
.
>
> [*ERROR*]
>
> [*ERROR*] For more information about the errors and possible solutions,
> please read the following articles:
>
> [*ERROR*] *[Help 1]*
>
> https://urldefense.proofpoint.com/v2/url?u=http-3A__cwiki.apache.org_confluence_display_MAVEN_MojoFailureException&d=DwIFaQ&c=qS4g
Hi Maral,
I could see the following error in the stacktrace,
java.lang.NoClassDefFoundError:
javax/activation/MimeTypeParseException
Could be an issue related to missing jar or classpath. Between, from where
did you check out the source code from?
On Thursday, July 18, 2019, Maral Amir wrote:
Hi Ravi,
Send out an email to dev-unsubscr...@ctakes.apache.org to un-subscribe.
On Wednesday, July 17, 2019, Ravi Tejwani
wrote:
> How can I un-subscribe from this? Any help would be kindly appreciated.
>
> - Ravi
>
> > On Jul 17, 2019, at 12:53 PM, gandhi rajan
> wrot
rash". That is not verbatim, but it is the general idea.
>
> If you can get ctakes-scrubber working in your project then it would be
> pretty easy to create an engine that does nothing except replace such
> generic tags with random names, dates, institutions, etc.
>
> Sean
&
Hi Masoud, we had a similar requirement to identify patient names in the
narratives text and I had a discussion with Sean Finan on patient name
identification feature in cTAKES. What he told at that point in time was
cTAKES dint supported patient name identification feature. Also as far as I
know,
Hi Jeff,
As far as I know, maintaining a separate SQL script to add additional
entries should work seamlessly.
On Saturday, June 15, 2019, Jeffrey Miller wrote:
> Thanks Remy. Does anyone know if these manually curated
> modifications/synonyms are tracked anywhere (aside from the dictionary
> i
he delay (work is busy) - will report back soon with the
> > pipelines.
> >
> > Thanks,
> > Matthew Vita
> >
> >
> >
> > On Mon, Jun 3, 2019 at 8:19 AM gandhi rajan
> > wrote:
> >
> >> Hi Matt, we gotta see what are the types of
hts or more debugging ideas are
> welcomed!*
>
>
>
> *Sort of unrelated:* I have a good amount of work getting the MySQL
> version’s README instructions cleaned up and removing some other bugs in
> the issue tracker. I wonder if it would be Apache license compliant for the
> ma
n the catalina logs :).
>
> Thanks,
> Matthew Vita
>
>
>
> On Thu, May 30, 2019 at 2:52 PM gandhi rajan
> wrote:
>
> > Hi Matt,
> >
> > The ctakes web rest module in cTAKES svn trunk is the latest which I
> > checked in and later modified by Tim.
&
Hi Matt,
The ctakes web rest module in cTAKES svn trunk is the latest which I
checked in and later modified by Tim.
On Thursday, May 30, 2019, Matthew Vita wrote:
> Hi Gandhi, Tim, Sean, and Community,
>
> I’ve been fixing up some of the README instructions for
> https://github.com/GoTeamEpsilo
Hi Jeff,
No specific reasons. MySQL is more reliable than in-memory database. You
can still stick to Hsqldb is you want to.
On Friday, May 31, 2019, Jeffrey Miller wrote:
> Hi Matthew,
>
> I don't know if you've run into this issue, but one of the problems I had
> when playing with the service
This is a great news and feeling happy to be a part of it. Sean, you
deserve a big applause on this journey. Thanks everyone who contributed to
this success.
On Thursday, March 28, 2019, Finan, Sean
wrote:
> Thank you all for your efforts on ctakes!
>
>
> https://opensource.com/article/19/3/apac
sult xml file to the disc; it still error out.
> >
> > Best,
> > Kathy
> >
> > On Mon, Mar 4, 2019 at 10:52 AM Miller, Timothy <
> > timothy.mil...@childrens.harvard.edu> wrote:
> >
> > > I don't know what the solution was, but I leave
inal Message-----
> From: gandhi rajan gandhi%20rajan%20%3cgandhiraja...@gmail.com%3e>>
> Reply-to:
> To: dev@ctakes.apache.org 22...@ctakes.apache.org%22%20%3c...@ctakes.apache.org%3e>>
> Subject: Re: ctake web service [EXTERNAL]
> Date: Wed, 6 Mar 2019 20:36:05 +0530
>
; On Mon, Mar 4, 2019 at 10:52 AM Miller, Timothy <
> timothy.mil...@childrens.harvard.edu timothy.mil...@childrens.harvard.edu>> wrote:
>
>
>
> I don't know what the solution was, but I leave my ctakes REST server
> running basically full time and haven't see
e to this issue? Does it try to keep the connection
> open while WS is up? Or does it open and close after it's done?
>
> We are still getting this error.
> "ERROR JdbcRareWordDictionary - No operations allowed after statement
> closed."
>
> Thanks
> Kathy
>
Hi Karel,
Such errors will be generally due to missing jars that needs to included in
class path.
On Tuesday, February 19, 2019, Karel Lahmy wrote:
> Hello,
>
>
> I've gone over the steps for checking out the sources using Eclipse as
> described here:
> https://cwiki.apache.org/confluence/displ
om a REST client
> api the url will be localhost:8080/ctakes-web-rest/service/analyze
>
> Thanks
> Tim
>
>
> -Original Message-
> From: gandhi rajan gandhi%20rajan%20%3cgandhiraja...@gmail.com%3e>>
> Reply-to:
> To: dev@ctakes.apache.org 22...@ctakes.ap
r
> something like that.
>
>
> Cheers,
> Sean
>
>
> From: gandhi rajan
> Sent: Friday, January 11, 2019 12:35 PM
> To: dev@ctakes.apache.org
> Subject: Re: AggregateCdaUmlsprocessor only annotates last section of CDA
> document [EXTERNAL]
>
> Sorry Sean. I wo
Completely agree. Kalyani, you could give it a try testing with MySQL DB.
On Friday, January 11, 2019, Finan, Sean
wrote:
> Most likely. That is the old dictionary lookup, which keeps open access
> to a file database.
>
> From: gandhi r
Hi, Have faced issues related to connectivity timeout using mysql db. But
never faced concurrency issue in our testing. Is it hsql db specific by any
chance?
On Friday, January 11, 2019, Finan, Sean
wrote:
> Hi Kalyani,
>
> At a guess, each parallel instance of ctakes is attempting to write som
Sorry Sean. I would love to do this but my old setup is all gone with my
previous organization. Gotta do a fresh setup in my personal machine all
over again. Sorry about that.
On Friday, January 11, 2019, Finan, Sean
wrote:
> Hi Sana,
>
> This might be related to
>
> https://issues.apache.org/ji
gt; really know REST that well, so thanks for contributing that code. That's
> the beauty of open source teams with different expertise!
> Tim
>
> ________
> From: Gandhi Rajan Natarajan
> Sent: Friday, December 21, 2018 3:13 AM
> To: dev@ctake
Hi Tim,
Thanks for taking your time out and checking this. Have left my comments in the
JIRA issue. Sorry that I could not improvise on the REST module which is more
suitable for our business needs due to lack of domain expertise.
Regards,
Gandhi
-Original Message-
From: Miller, Timoth
Hi Peter,
I use Java 1.8.0_171. Checked out the source code from -
https://svn.apache.org/repos/asf/ctakes/trunk
I don’t get any compilation issue in ctakes-temporal module running the command
- " mvn clean install"
Regards,
Gandhi
-Original Message-
From: Peter Abramowitsch
Sent: Su
Hi Rumpa,
I guess you are using cTAKES 4.0.0 user installation setup which does not have
LabValueFinder implementation. Try building ctakes core jar from cTAKES SVN
trunk and try again. It should work fine.
Regards,
Gandhi
-Original Message-
From: Rumpa Giri
Sent: Wednesday, October 3
Thanks for providing the access James.
@Rumpa, The broken link is corrected now.
Regards,
Gandhi
-Original Message-
From: James Masanz
Sent: Friday, October 26, 2018 10:04 PM
To: dev@ctakes.apache.org
Subject: Re: [Request for information] - how do I become a committer?
Great to hear y
Hi Patrick,
If the default CVD works fine, then we may have to look at tika app
implementation on how it processes the cTAKES output. It required you can come
up with your parser.
Please check this link for more info on custom parser -
https://github.com/GoTeamEpsilon/ctakes-rest-service/blob/
ve to set the fast dictionary parameter
exactly. Can you point me towards the right direction?
Thanks,
Brihat
On Wed, Oct 10, 2018 at 12:11 AM Gandhi Rajan Natarajan <
gandhi.natara...@arisglobal.com> wrote:
> Hi Brihat,
>
> Is your 'CTAKES_HOME' environment variable p
Hi Brihat,
Is your 'CTAKES_HOME' environment variable pointing to the right directory?
Also I could see that you are trying to execute runDictionaryCreator.sh
available under the checked out codebase from SVN. Did you build the complete
cTAKES code before executing this?
Regards,
Gandhi
-
manually connect when processing (re)starts.
I am really busy these days, and this is just an off-the-cuff idea, but if
anybody out there can tackle this please let the devlist know about it.
Sean
-Original Message-
From: Gandhi Rajan Natarajan [mailto:gandhi.natara...@arisglobal.com]
Sent
Hi Kathy,
Sometime back we encountered this issue and the problem seems to be DB
connections getting timed out.
Currently we are using the following implementations:
"org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary" and
"org.apache.ctakes.dictionary.lookup2.concept.JdbcC
at 8:21 AM, Gandhi Rajan Natarajan <
gandhi.natara...@arisglobal.com> wrote:
> Hi All,
>
> Does cTAKES provides any annotators or any other mechanism to extract
> out family history information of a patient?
>
> For e.g, if the input is "Patient has Cancer. His mother
Hi All,
Does cTAKES provides any annotators or any other mechanism to extract out
family history information of a patient?
For e.g, if the input is "Patient has Cancer. His mother has arthritis". Is
there a way to extract out arthritis as family disease history?
This email and any files transm
Hi Ravi,
Please refer to the following github repository -
https://github.com/GoTeamEpsilon/ctakes-rest-service/tree/master/ctakes-web-rest
This is a beta version of the cTAKES REST service implementation. Hope it helps.
-Original Message-
From: Ravindranath Oruganti
Sent: Friday, July
Hi Ken,
Similar issues are creeping up very frequently off late. Though I’m not sure
what exactly is the issue here, in one of the recent mail chains Dmitriy has
mentioned the following:
We had similar issues back in February (you can search the email archive). I
was under impression
that this
trivial change, the system has to re-do a large amount of downloading
and building.
On Thu, Jun 14, 2018 at 4:53 PM, Gandhi Rajan Natarajan <
gandhi.natara...@arisglobal.com> wrote:
> Hi Ted,
>
> Try building 'ctakes-web-rest' module in https://github.com/
> GoTea
.
I also found that Tika has a cTAKES REST API, but unfortunately it loads the
model on each request.
On Wednesday, June 13, 2018, Gandhi Rajan Natarajan <
gandhi.natara...@arisglobal.com> wrote:
> Hi Ted,
>
> The implementation suggested by Peter is already available in
>
Hi Ted,
The implementation suggested by Peter is already available in
https://github.com/GoTeamEpsilon/ctakes-rest-service/tree/master/ctakes-web-rest
Building this project will give you a WAR file which you need to deploy in
Tomcat.
Regards,
Gandhi
-Original Message-
From: Peter Abra
Even if you send it in batch, the processing will be sequential I guess. You
may have to run multiple instances of REST service to process huge volume of
records.
Regards,
Gandhi
-Original Message-
From: Zakir Saifi [mailto:zakir.sa...@raxa.com]
Sent: Monday, May 21, 2018 4:23 PM
To: de
Hi,
As far as I know, there is no annotations available in cTAKES to extract person
specific details as I checked with Sean earlier. May be he can elaborate more
on this.
Regards,
Gandhi
-Original Message-
From: IBIL Global [mailto:ibilglob...@gmail.com]
Sent: Wednesday, May 09, 2018 1
Hi Tim,
Though I'm not an expert in git, I guess there is a setting to turn off this
feature of auto correcting line endings in git-svn.
Just have a look at this link -
https://dzone.com/articles/git-showing-file-modified-even and see if it helps.
Regards,
Gandhi
-Original Message-
F
Hi Zakir,
I could see that you are using customDictionary.xml as dictionary descriptor.
Does that XML file contains valid jdbcUrl property?
Regards,
Gandhi
-Original Message-
From: Zakir Saifi [mailto:zakir.sa...@raxa.com]
Sent: Tuesday, May 01, 2018 11:32 AM
To: dev@ctakes.apache.org
HI Sean,
I guess he meant about annotators like Negation annotator, Context annotator
etc.. and its short description if I'm right for the write-up.
Regards,
Gandhi
-Original Message-
From: Finan, Sean [mailto:sean.fi...@childrens.harvard.edu]
Sent: Monday, April 30, 2018 8:28 PM
To: d
Hi Peter,
I hope this link -
https://cwiki.apache.org/confluence/display/CTAKES/Piper+Files should help you
out. Also as far as I know, I doubt JsonCasSerializer has been packaged for
Piper.
Sean could elaborate more on this but I guess he is on vacation.
Regards,
Gandhi
-Original Messag
Hi Abilash,
It is not yet available in CATKES codebase but the module is more or less
complete. You can check out the beta version of it under
https://github.com/GoTeamEpsilon/ctakes-rest-service/tree/master/ctakes-web-rest
We will check-in the same to CTAKES codebase after getting buy in from
Hi Sean,
Please find the response from Sean Finan for the similar question I asked him
earlier:
"Ctakes doesn't really have a steadfast process for making upgrades.
You should create a jira item or use an existing one. Any commits should have
a comment/message starting with the jira item. Fo
t.skip=true
>>
>> Then you can pick up the updated ctakes-gui jar file from
>> 'ctakes-gui\target' folder and replace the same in your project from
>> where you are running cTAKES.
>>
>> Regards,
>> Gandhi
>>
>>
>> -Original Message-
ues building up,
and I will try to try to address them asap; I don't know when I'll have the
time and energy to get back to the devlist.
Feeling a bit guilty,
Sean
________
From: Gandhi Rajan Natarajan
Sent: Wednesday, March 28, 2018 8:56 AM
To
2018 at 10:31 AM, Gandhi Rajan Natarajan <
gandhi.natara...@arisglobal.com> wrote:
> Hi All,
>
> I'm using LabValueFinder annotator in my piper file and when I analyze
> the following text:
>
>
> "HEPATIC FUNCTION PANEL Result Value Ref Range Albumin 2.2 (*) 3
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