Hi Ravi, Send out an email to dev-unsubscr...@ctakes.apache.org to un-subscribe.
On Wednesday, July 17, 2019, Ravi Tejwani <ratej...@icloud.com.invalid> wrote: > How can I un-subscribe from this? Any help would be kindly appreciated. > > - Ravi > > > On Jul 17, 2019, at 12:53 PM, gandhi rajan <gandhiraja...@gmail.com> > wrote: > > > > Thanks for the insight Sean. > > > > On Wednesday, July 17, 2019, Finan, Sean < > sean.fi...@childrens.harvard.edu> > > wrote: > > > >> Hi All, > >> > >> ctakes-scrubber is not in any ctakes release and it is not in the main > >> repository. It never went beyond experimental and resides within the > >> ctakes sandbox. https://svn.apache.org/repos/asf/ctakes/sandbox/ > >> > >> From what I recall, scrubber does not have "real" name replacement, but > >> instead de-identifies entities by removing them and inserting a tag > >> indicating the type of entity. For instance: "John has a rash" -> > >> "[person] has a rash". That is not verbatim, but it is the general > idea. > >> > >> If you can get ctakes-scrubber working in your project then it would be > >> pretty easy to create an engine that does nothing except replace such > >> generic tags with random names, dates, institutions, etc. > >> > >> Sean > >> ________________________________________ > >> From: gandhi rajan <gandhiraja...@gmail.com> > >> Sent: Wednesday, July 17, 2019 12:26 PM > >> To: dev@ctakes.apache.org > >> Subject: Re: Synthetic replacement feature in cTAKES Scrubber [EXTERNAL] > >> > >> Hi Masoud, we had a similar requirement to identify patient names in the > >> narratives text and I had a discussion with Sean Finan on patient name > >> identification feature in cTAKES. What he told at that point in time was > >> cTAKES dint supported patient name identification feature. Also as far > as I > >> know, I m not really sure whether scrubber made it to the cTAKES > codebase. > >> > >> Sean, Please correct me if I m wrong. > >> > >> On Wednesday, July 17, 2019, Masoud Rouhizadeh <m...@jhu.edu> wrote: > >> > >>> Dear cTAKES developer, > >>> This is Masoud Rouhizadeh from JHU. I'm leading the NLP effort at the > >>> Institute for Clinical and Translational Research and work on > >>> enterprise-level NLP projects at Johns Hopkins Medicine. One of the > major > >>> goals we are targeting is de-identification of a large number of notes > >>> (350M) to prepare them for search and indexing (Elasticsearch and > Solr). > >> I > >>> have been in touch with Dr. Guergana Savova about cTAKES Scrubber and > she > >>> has been very helpful. > >>> > >>> One of our most desired features in the de-identification pipeline is > >>> synthetic replacement (e.g. Nancy->Sally; random female first name > >>> consistently replaces a female first name.). I wasn't able to find > >>> information about this feature in cTAKES Scrubber. Is synthetic > >> replacement > >>> functionality part of the cTAKES Scrubber, or can it be added by > >>> post-processing the output? For instance, if we know the name Nancy is > >>> removed from multiple places, can we use a name dictionary to insert > >> random > >>> female first names in those places (just a thought)? > >>> Overall, I wanted to emphasize that cTAKES Scrubber is one of our main > >>> candidates and I'm hoping that we could find ways to collaborate. > >>> > >>> Thank you very much, > >>> Masoud > >>> > >>> ---- > >>> Masoud Rouhizadeh, PhD > >>> Faculty - Division of Health Science Informatics (DHSI) > >>> NLP Lead - Institute for Clinical and Translational Research (ICTR) > >>> Johns Hopkins University School of Medicine > >>> https://urldefense.proofpoint.com/v2/url?u=https-3A__www.cs. > >> jhu.edu_-7Emrou_&d=DwIBaQ&c=qS4goWBT7poplM69zy_ > 3xhKwEW14JZMSdioCoppxeFU&r= > >> fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m= > >> aIXsCuGWJqYNNtMb1ZfvZ0gAiw57gtrpZGqLVZjn5o4&s=9mLpsY5OPs7_ > >> sAMhA60kB0PJcsttBBK6BYRN_xThZSo&e= > >>> > >>> > >> > >> -- > >> Regards, > >> Gandhi > >> > >> "The best way to find urself is to lose urself in the service of others > >> !!!" > >> > > > > > > -- > > Regards, > > Gandhi > > > > "The best way to find urself is to lose urself in the service of others > !!!" > > -- Regards, Gandhi "The best way to find urself is to lose urself in the service of others !!!"
