Bug#989598: unblock: trilinos/12.18.1-2

2021-06-08 Thread Drew Parsons
0 +0200 @@ -1,3 +1,11 @@ +trilinos (12.18.1-2) unstable; urgency=medium + + * Team upload. + * libtrilinos-ml-dev Depends: libtrilinos-aztecoo-dev. +Closes: #989488. + + -- Drew Parsons Sat, 05 Jun 2021 12:50:20 +0200 + trilinos (12.18.1-1) unstable; urgency=medium * New upstream re

Bug#989654: unblock: dolfin/2019.2.0~git20201207.b495043-5

2021-06-09 Thread Drew Parsons
for demos properly legible. + + -- Drew Parsons Wed, 09 Jun 2021 13:23:16 +0200 + dolfin (2019.2.0~git20201207.b495043-4) unstable; urgency=medium * debian/tests: add ppc64el to the list of arches skipping some tests diff -Nru dolfin-2019.2.0~git20201207.b495043/debian/rules dolfin-2019.2.0

Bug#989655: unblock: dolfinx/2019.2.0~git20210130.c14cb0a-5

2021-06-09 Thread Drew Parsons
~git20210130.c14cb0a-5) unstable; urgency=medium + + * use triple-slash (file:///) for mathjax local url replacement to +make docs for demos properly legible. + + -- Drew Parsons Wed, 09 Jun 2021 14:59:59 +0200 + dolfinx (2019.2.0~git20210130.c14cb0a-4) unstable; urgency=medium * update

Bug#883194: please convert mountstats and nfsiostat scripts to Python3

2021-06-21 Thread Drew Parsons
Package: nfs-common Followup-For: Bug #883194 X-Debbugs-Cc: debian-release@lists.debian.org I was surprised to see python2 pulled in on a new bullseye installation using nfs. It's a trivial patch of course to update the hashbangs for mountstats and nfsiostat in nfs-common 1:1.3.4-5 to python3. A

Bug#883194: please convert mountstats and nfsiostat scripts to Python3

2021-06-27 Thread Drew Parsons
Package: nfs-common Followup-For: Bug #883194 X-Debbugs-Cc: debian-release@lists.debian.org Control: severity 883194 serious Control: usertag 883194 py2removal Since removing Python2 is a release goal for bullseye (other packages have been removed because of their python2 dependencies), and since

Re: Bug#883194: please convert mountstats and nfsiostat scripts to Python3

2021-06-27 Thread Drew Parsons
On 2021-06-28 00:35, Diederik de Haas wrote: On zondag 27 juni 2021 22:37:10 CEST Salvatore Bonaccorso wrote: Let's ask the release team instead. Here my arguments why: nfs-utils needs a major rehaul, this was not possible to finish in time for bullseye, so this means nfs-utils is generally in n

Bug#985228: unblock: petsc/3.14.5+dfsg1-2

2021-03-16 Thread Drew Parsons
Thanks Ivo, I'll prepare a filtered diff for consideration. Drew On 2021-03-16 17:32, Ivo De Decker wrote: Control: tags -1 moreinfo ... [ ] attach debdiff against the package in testing We ask these this for a reason. The current diff between the version in testing and unstable is very

Bug#985228: unblock: petsc/3.14.5+dfsg1-2

2021-03-17 Thread Drew Parsons
On 2021-03-16 17:32, Ivo De Decker wrote: Control: tags -1 moreinfo ... On Sun, Mar 14, 2021 at 09:01:26PM +0100, Drew Parsons wrote: upstream released petsc 3.14.5 with bug fixes only. This will help improve the stability of the package over the lifetime of the bullseye release. I'

Bug#985672: unblock: mumps/5.3.5-2

2021-03-21 Thread Drew Parsons
: libmumps-64pord-seq-5.3 +(not libmumps-seq-dev, libmumps-seq-5.3). Closes: #985514. + * Standards-Version: 4.5.1 + + -- Drew Parsons Sat, 20 Mar 2021 04:52:40 +0100 + mumps (5.3.5-1) unstable; urgency=medium * Team upload. diff -Nru mumps-5.3.5/debian/control mumps-5.3.5/debian/control

Bug#986142: buster-pu: package h5py/2.8.0-3

2021-03-30 Thread Drew Parsons
s pkg-config file + (not available in libhdf5-mpi-dev 1.10.4+repack-10 for buster) +- revert use of system liblzf-dev from 2.10.0-8 + * use wildcard for mathjax version when replacing references +(but only replace references if they are found) + + -- Drew Parsons Tue, 30 Mar 2021 13:

Bug#986142: buster-pu: package h5py/2.8.0-3

2021-03-30 Thread Drew Parsons
3-30 13:41, Adam D. Barratt wrote: Control: tags -1 + moreinfo On Tue, 2021-03-30 at 13:18 +0200, Drew Parsons wrote: [ Reason ] Bug#984638 has requested a backport of h5py to buster in order to support other packages used on it. Usually I'd expect that wording to mean an upload to buster-ba

Bug#985228: unblock: petsc/3.14.5+dfsg1-2

2021-04-08 Thread Drew Parsons
On 2021-04-08 14:29, Graham Inggs wrote: Unblocked. Thanks Graham. While petsc and release is close to mind, I'd like to request preauthorization for petsc/3.14.5+dfsg1-3 to make a minimal update to fix Bug#985659 (fixing broken symlinks in docs). Beyond that, what is your mood with respec

Bug#985228: unblock: petsc/3.14.5+dfsg1-2

2021-04-08 Thread Drew Parsons
On 2021-04-08 15:25, Paul Gevers wrote: Hi Drew, On 08-04-2021 15:01, Drew Parsons wrote: While petsc and release is close to mind, I'd like to request preauthorization for petsc/3.14.5+dfsg1-3 to make a minimal update to fix Bug#985659 (fixing broken symlinks in docs). You stretch

Bug#986752: unblock: petsc/3.14.5+dfsg1-3

2021-04-11 Thread Drew Parsons
excreate.c +- PR3722_umfpack_ordering.diff, use default umfpack ordering + since much faster than PETSc ordering +- PR3728_DM_anchor_initialize.diff, initialize variable in DM + anchor calculation + + -- Drew Parsons Fri, 09 Apr 2021 13:28:02 +0200 + petsc (3.14.5+dfsg1-2) unstable; urgency=medium *

Bug#986994: unblock: avogadrolibs/1.93.1-3

2021-04-15 Thread Drew Parsons
ogadrolibs (1.93.1-3) unstable; urgency=medium + + * debian patch export_molecule_save_68fb007.patch applies upstream +commit 68fb007 (PR#517) to fix the Save dialog when exporting +molecules (upstream issue #439). + + -- Drew Parsons Wed, 14 Apr 2021 22:48:26 +0200 + avogadrolibs (1.93.1-

Bug#987966: unblock: petsc/3.14.5+dfsg1-4

2021-05-02 Thread Drew Parsons
ioned python. +Closes: #987618. + + [ Drew Parsons ] + * add lintian overrides to ignore breaks-without-version warning in +libpetsc-real3.14 and libpetsc-complex3.14 from Breaks: libpetsc*3.10* +and Breaks libslepc*3.10*. The version is embedded in the package +names. + + -- Drew Parso

Bug#988529: unblock: golang-go.opencensus/0.22.4-2

2021-05-14 Thread Drew Parsons
@@ +golang-go.opencensus (0.22.4-2) unstable; urgency=medium + + * Team upload. + * debian patch skip_flaky_test.patch skips Test_Worker_MultiExport +in stats/view. The test is flaky, occasionally failing. +See Debian Bug#988250, upstream Issue#1259. + + -- Drew Parsons Fri, 14 May 2021 23:11

Bug#988529: unblock: golang-go.opencensus/0.22.4-2

2021-05-15 Thread Drew Parsons
On 2021-05-15 07:53, Paul Gevers wrote: Hi Drew, On 14-05-2021 23:43, Drew Parsons wrote: Please unblock package golang-go.opencensus Assuming all the test will pass, there's nothing for us to do as the package isn't blocked in this stage of the freeze. Thanks Paul. I forgo

Bug#996204: transition: numerical library stack

2021-10-12 Thread Drew Parsons
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: transition X-Debbugs-Cc: debian-scie...@lists.debian.org, Anton Gladky I'd like to proceed with a transition of the numerical library stack. This involves superlu 5.2.2+dfsg1 -> 5.3.0+dfsg1

Bug#996204: transition: numerical library stack

2021-10-15 Thread Drew Parsons
On 2021-10-15 21:02, Sebastian Ramacher wrote: Control: tags -1 confirmed On 2021-10-12 13:09:02 +0200, Drew Parsons wrote: I'd like to proceed with a transition of the numerical library stack. This involves ... Please go ahead Cheers Ben file: title = "numerical lib

Bug#996204: transition: numerical library stack

2021-10-18 Thread Drew Parsons
On 2021-10-16 00:01, Drew Parsons wrote: On 2021-10-15 21:02, Sebastian Ramacher wrote: I'd like to proceed with a transition of the numerical library stack. This involves ... Thanks Sebastian. I'll start from superlu (and xtensor already underway). Waiting for the trilin

Bug#996204: transition: numerical library stack

2021-10-25 Thread Drew Parsons
The sundials 5.8.0 test build in experimental looks successful. Probably not worth waiting for the mipsel build, it's been slow to build, especially for experimental. Drew On 2021-10-22 17:40, Anton Gladky wrote: Great, thanks! Will do it very shortly. Anton Sebastian Ramacher schrieb

Bug#996204: transition: numerical library stack

2021-10-26 Thread Drew Parsons
5 Uhr schrieb Drew Parsons : The sundials 5.8.0 test build in experimental looks successful. Probably not worth waiting for the mipsel build, it's been slow to build, especially for experimental.

Bug#996204: transition: numerical library stack

2021-10-29 Thread Drew Parsons
On 2021-10-22 14:35, Sebastian Ramacher wrote: On 2021-10-12 13:09:02, Drew Parsons wrote: ... I'd like to proceed with a transition of the numerical library stack. ... (along with other fenics components). There is currently some problem with fenics-dolfinx 1:0.3.0-4 on 32-bit arches

Bug#996204: transition: numerical library stack

2021-10-30 Thread Drew Parsons
On 2021-10-30 11:04, Sebastian Ramacher wrote: On 2021-10-30 00:50:49 +0200, Drew Parsons wrote: I've got dolfinx passing (or skipping) its own tests on 32-bit. There's a problem with 32-bit MPI though. i386 and armhf are failing to run pytest over python unit tests in MPI ...

Bug#996204: transition: numerical library stack

2021-11-03 Thread Drew Parsons
On 2021-10-31 20:57, Anton Gladky wrote: sundials_5.8.0 is in unstable already. Thanks Anton. Is deal.ii the core blocker at this point? Looks like it has other issues, Bug#996277, not related to the numerical library transition. It's scheduled for removal next week. Drew

Bug#996204: transition: numerical library stack: hypre SONAME (Policy 8.1)

2021-11-03 Thread Drew Parsons
On 2021-11-03 20:57, Sebastian Ramacher wrote: Source: hypre Severity: serious ... The real blocker is hypre, specifically: hypre (2.18.1-1) experimental; urgency=medium . * Team upload. * New upstream release. * Standards-Version: 4.4.1 * Provide library binary package as libhypr

Bug#996204: transition: numerical library stack: hypre SONAME (Policy 8.1)

2021-11-04 Thread Drew Parsons
On 2021-11-04 21:41, Sebastian Ramacher wrote: On 2021-11-03 22:33:01 +0100, Drew Parsons wrote: ... The problem that hypre 2.18.1-1 (un-versioned libhypre) intended to solve is that hypre is ABI-ignorant (https://github.com/hypre-space/hypre/issues/56), so each point patch release would have

Bug#996204: transition: numerical library stack: hypre SONAME (Policy 8.1)

2021-11-05 Thread Drew Parsons
On 2021-11-04 22:35, Drew Parsons wrote: On 2021-11-04 21:41, Sebastian Ramacher wrote: On 2021-11-03 22:33:01 +0100, Drew Parsons wrote: ... Is it best to revert back to strict Policy 8.1 compliance, which will slow down hypre patch release updates? Yes. Having to wait for binNEW to being

Bug#1006648: transition: numerical stack: slepc petsc hypre scotch scalapack

2022-03-01 Thread Drew Parsons
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: transition We've got a pile-up of numerical libraries waiting in experimental. I'd like to clear them out into unstable. This will also let scalapack rebuild against mpich 4. The transitions are:

Bug#1006648: transition: numerical stack: slepc petsc hypre scotch scalapack

2022-03-09 Thread Drew Parsons
On 2022-03-05 12:29, Sebastian Ramacher wrote: Control: tags -1 confirmed On 2022-03-01 13:34:21 +0100, Drew Parsons wrote: Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: transition We've got a pile-up of numerical libraries waiti

Bug#1006648: transition: numerical stack: slepc petsc hypre scotch scalapack

2022-03-15 Thread Drew Parsons
Control: block 1006648 by 1006615 On 2022-03-05 12:29, Sebastian Ramacher wrote: Control: tags -1 confirmed On 2022-03-01 13:34:21 +0100, Drew Parsons wrote: The transitions are: scalapack 2.1 → 2.2 scotch 6.1 → 7.0 hypre 2.22 → 2.23 petsc 3.15 → 3.16 slepc 3.15 → 3.16

Bug#1006648: transition: numerical stack: slepc petsc hypre scotch scalapack

2022-03-16 Thread Drew Parsons
On 2022-03-16 09:27, Sebastian Ramacher wrote: On 2022-03-15 20:33:02 +0100, Drew Parsons wrote: Control: block 1006648 by 1006615 On 2022-03-05 12:29, Sebastian Ramacher wrote: > Control: tags -1 confirmed > > On 2022-03-01 13:34:21 +0100, Drew Parsons wrote: > > > >

Bug#1030531: More binNMUs for missing python3-h5py dependencies

2023-02-04 Thread Drew Parsons
On 2023-02-04 18:02, Adrian Bunk wrote: Usertags: binnmu nmu pyfai_0.21.3+dfsg1-2 . ANY . unstable . -m "Rebuild to pick up python3-h5py dependency (see #1030220)" nmu unifrac_1.2-3 . ANY . unstable . -m "Rebuild to pick up python3-h5py dependency (see #1030220)" nmu xraylarch_0.9.58+ds1-5 . ANY

Bug#1032073: unblock: scipy/1.10.1-1

2023-02-27 Thread Drew Parsons
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: unblock X-Debbugs-Cc: sc...@packages.debian.org Control: affects -1 + src:scipy Please unblock package scipy This is a prerequest, before uploading. [ Reason ] scipy is central tool for numerical

Bug#1032073: unblock: scipy/1.10.1-1

2023-02-27 Thread Drew Parsons
Copying the upstream scipy 1.10.1 Release Notes for your convenience. From https://docs.scipy.org/doc/scipy/release.1.10.1.html SciPy 1.10.1 is a bug-fix release with no new features compared to 1.10.0. Issues closed for 1.10.1 #14980: BUG: Johnson’s algorithm fails without negative cyc

Bug#1032577: unblock: opendrop/3.3.1-5

2023-03-09 Thread Drew Parsons
errors by +asserting use of Gtk 3. + * Standards-Version: 4.6.2 + + -- Drew Parsons Thu, 09 Mar 2023 02:24:59 +0100 + opendrop (3.3.1-4) unstable; urgency=medium * debian/patches/sundials_nvector_API6.patch updates sundials diff -Nru opendrop-3.3.1/debian/control opendrop-3.3.1/debian

Bug#1033242: unblock: nwchem/7.0.2-4

2023-03-20 Thread Drew Parsons
-mpich.README.Debian to document the need to use +ARMCI_USE_WIN_ALLOCATE=0 when running nwchem with MPICH 4.0.2 +(binary nwchem.mpich, fixed in mpich 4.0.3). +See upstream Issue#633. + + -- Drew Parsons Sun, 19 Mar 2023 15:01:42 +0100 + nwchem (7.0.2-3) unstable; urgency=medium

Bug#1033244: unblock: armci-mpi/0.3.1~beta-7

2023-03-20 Thread Drew Parsons
ci-mpi (0.3.1~beta-7) unstable; urgency=medium + + * Team upload. + * run build-time tests on only 1 process if only 1 CPU is available. +Closes: #1031064. + * debian/tests: don't run mpich tests on s390x. Closes: #1009772. + + -- Drew Parsons Sun, 19 Mar 2023 14:08:54 +0100 + armci-m

Bug#928227: unblock: golang-golang-x-net-dev/1:0.0+git20181201.351d144+dfsg-3

2019-04-30 Thread Drew Parsons
+ + -- Drew Parsons Tue, 30 Apr 2019 16:42:08 +0800 + golang-golang-x-net-dev (1:0.0+git20181201.351d144+dfsg-2) unstable; urgency=medium * Remove obsolete patch for s390. Closes: #916236. diff -Nru golang-golang-x-net-dev-0.0+git20181201.351d144+dfsg/debian/patches/CVE-2018-17846_d26f9f9.patch

Bug#928227: Acknowledgement (unblock: golang-golang-x-net-dev/1:0.0+git20181201.351d144+dfsg-3)

2019-05-23 Thread Drew Parsons
Paul Gevers wrote: I have decided that I'll let golang-golang-x-net-dev migrate to testing do the binNMUs in buster. I'll leave the bug open until the rebuilds have succeeded to keep track of the issue. Is there a buildd url we can use to track the status of the binNMUs? Or something akin to

Bug#928227: unblock: golang-golang-x-net-dev/1:0.0+git20181201.351d144+dfsg-3

2019-06-18 Thread Drew Parsons
Just want to say, thanks Shengjing, Tobias and Paul for working through the issues to get golang ready for buster. Drew

Bug#928227: unblock: golang-golang-x-net-dev/1:0.0+git20181201.351d144+dfsg-3

2019-06-19 Thread Drew Parsons
On 2019-06-19 01:01, Paul Gevers wrote: Hi Drew, On 18-06-2019 16:22, Drew Parsons wrote: Just want to say, thanks Shengjing, Tobias and Paul for working through the issues to get golang ready for buster. Thank you for the thanks, but to be fair, it isn't finished. The golang-golang-

Bug#931105: unblock: python-periodictable/1.5.0-8

2019-06-26 Thread Drew Parsons
+0800 +++ python-periodictable-1.5.0/debian/changelog 2019-06-26 16:18:35.0 +0800 @@ -1,3 +1,10 @@ +python-periodictable (1.5.0-8) unstable; urgency=medium + + [ Stuart Prescott ] + * Fix typo in Suggests entry for documentation (Closes: #923744). + + -- Drew Parsons Wed, 26 Jun 2019 16:18:35

Bug#933043: nmu: petsc_3.10.5+dfsg1-1

2019-07-25 Thread Drew Parsons
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: binnmu Hypre 2.16.0 is uploaded to unstable so we need binNMUs for a small transition. nmu petsc_3.10.5+dfsg1-1 . ANY . unstable . -m "rebuild against hypre 2.16.0" After petsc is done, slepc and

Bug#1016084: transition: petsc

2022-07-26 Thread Drew Parsons
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: transition I'd like to proceed with the next upgrade of the numerical library stack*. superlu-dist 7.2.0 -> 8.1.0 hypre 2.23.0 -> 2.25.0 mumps 5.4.1 -> 5.5.0 petsc 3.16

Bug#1016084: transition: petsc

2022-08-16 Thread Drew Parsons
On 2022-08-16 21:12, Sebastian Ramacher wrote: Control: tags -1 confirmed On 2022-07-31 12:47:15 +0200, Sebastian Ramacher wrote: On 2022-07-26 20:34:10 +0200, Drew Parsons wrote: > > I'd like to proceed with the next upgrade of the numerical library > stack*. > > superlu-d

Bug#1016084: transition: petsc

2022-08-31 Thread Drew Parsons
On 2022-08-16 21:44, Drew Parsons wrote: We're conflicted by pmix Bug#1017356. I would be better if MPI (ucx/pmix) upgrades were handled as a transition tested first in experimental :( The pmix problem is now worked around by reverting back to the earlier version. I'll procee

Bug#1016084: transition: petsc

2022-09-01 Thread Drew Parsons
On 2022-08-31 11:57, Drew Parsons wrote: The pmix problem is now worked around by reverting back to the earlier version. I'll proceed with the transition of the numerical stack now. Lower level libraries are uploaded. We'll want mumps level 2 built to prepare trilinos for the p

Bug#1016084: transition: petsc

2022-09-01 Thread Drew Parsons
On 2022-09-01 23:32, Sebastian Ramacher wrote: Lower level libraries are uploaded. We'll want mumps level 2 built to prepare trilinos for the petsc build. Scheduled mumps level 2 (except trilinos) ^^^ Wait no, it's trilinos that I'm waiting for! petsc

Bug#1016084: transition: petsc

2022-09-04 Thread Drew Parsons
All uploads are done now. Let the binNMUs rip. Drew

Bug#1016084: transition: petsc

2022-09-19 Thread Drew Parsons
On 2022-09-08 10:19, Sebastian Ramacher wrote: On 2022-09-04 10:02:53 +0200, Drew Parsons wrote: All uploads are done now. Let the binNMUs rip. The rebuilds have been done. The transition is now blocked on #1019287. Bug#1019287 is now fixed, all new builds have now migrated to testing

Bug#1016084: transition: petsc

2022-09-19 Thread Drew Parsons
On 2022-09-19 12:47, Sebastian Ramacher wrote: On 2022-09-19 11:54:36 +0200, Drew Parsons wrote: This transition can be considered done, if we're happy with the state of rheolef reported by https://release.debian.org/transitions/html/auto-mumps.html https://buildd.debian.org/s

Bug#1016084: transition: petsc

2022-09-22 Thread Drew Parsons
On 2022-09-22 10:07, Sebastian Ramacher wrote: On 2022-09-19 13:28:21 +0200, Drew Parsons wrote: On 2022-09-19 12:47, Sebastian Ramacher wrote: > On 2022-09-19 11:54:36 +0200, Drew Parsons wrote: > > This transition can be considered done, if we're happy with the > >

Bug#1016084: transition: petsc

2022-09-22 Thread Drew Parsons
On 2022-09-22 10:07, Sebastian Ramacher wrote: On 2022-09-19 13:28:21 +0200, Drew Parsons wrote: On 2022-09-19 12:47, Sebastian Ramacher wrote: > On 2022-09-19 11:54:36 +0200, Drew Parsons wrote: > > This transition can be considered done, if we're happy with the > >

Bug#1016084: transition: petsc

2022-09-22 Thread Drew Parsons
ll request. https://salsa.debian.org/science-team/getfem/-/merge_requests/3 I can also add the transition to a newer mumps in the same branch if you like. Best regards Konstantinos On Thu, Sep 22, 2022 at 2:12 PM Drew Parsons wrote: On 2022-09-22 10:07, Sebastian Ramacher wrote: On 2022-09-19 13:2

Bug#1025056: transition: numerical library transition: hypre / petsc / slepc / sundials

2022-11-29 Thread Drew Parsons
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: transition X-Debbugs-Cc: Anton Gladky We'd like to update the numerical library stack in time for the new stable release. Affected libraries are hypre2.25.0 -> 2.26.0 petsc/slepc3.17

Bug#1025056: transition: numerical library transition: hypre / petsc / slepc / sundials

2022-12-19 Thread Drew Parsons
The hypre/petsc part of this transition is complete. The sundials part is waiting for dyssol to be patched. Anton is preparing this. Drew On 2022-11-29 23:34, Sebastian Ramacher wrote: Control: tags -1 confirmed Hi Drew On 2022-11-29 12:16:55 +0100, Drew Parsons wrote: Package

Bug#1025056: transition: numerical library transition: hypre / petsc / slepc / sundials

2023-01-02 Thread Drew Parsons
On 2022-12-31 17:59, Anton Gladky wrote: Hi Sebastian, thanks for noting it! #1027402 is fixed now in unstable (that was wrong version in Breaks+Replaces). Am Sa., 31. Dez. 2022 um 14:20 Uhr schrieb Sebastian Ramacher : It's now in unstable. Please also fix #1027402. Looks like deal.ii

Bug#933043: Acknowledgement (nmu: petsc_3.10.5+dfsg1-1)

2019-07-28 Thread Drew Parsons
On 2019-07-26 08:57, Debian Bug Tracking System wrote: Thank you for filing a new Bug report with Debian. You can follow progress on this Bug here: 933043: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=933043. I missed the name of sundials in the second set of binNMUs with slepc: nmu pets

Bug#933043: Acknowledgement (nmu: petsc_3.10.5+dfsg1-1)

2019-07-31 Thread Drew Parsons
On 2019-07-31 20:58, Paul Gevers wrote: All those have been built now. However, hypre will not be able to migrate because the autopkgtest of petsc is failing, as it does in unstable as well. Awkward. I'll check if petsc 3.11 has the same problem. Drew

Bug#933043: Acknowledgement (nmu: petsc_3.10.5+dfsg1-1)

2019-07-31 Thread Drew Parsons
On 2019-07-31 22:14, Drew Parsons wrote: On 2019-07-31 20:58, Paul Gevers wrote: All those have been built now. However, hypre will not be able to migrate because the autopkgtest of petsc is failing, as it does in unstable as well. Awkward. I'll check if petsc 3.11 has the same pr

Bug#933623: transition: petsc

2019-07-31 Thread Drew Parsons
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: transition The hypre 2.16.0 upgrade revealed an incompatibility between petsc 3.10 and hypre 2.16.0. PETSc upstream has dealt with the issue with a couple of recent patches. The best way to stabil

what is the protocol for closing transition tracking bug?

2019-08-02 Thread Drew Parsons
I noticed a lot of transition tracking bugs for old transitions are still open at https://bugs.debian.org/cgi-bin/pkgreport.cgi?users=release.debian@packages.debian.org;tag=transition Just wondering, what is the Release Team's protocol for closing these old transition bugs? Would you lik

Bug#934725: nmu: golang-github-google-pprof_0.0~git20190109.e84dfd6-1

2019-08-13 Thread Drew Parsons
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: binnmu golang-github-google-pprof is holding up other Go packages from migrating to testing. pprof itself is not migrating since it was built by the uploader and never built on the buildds. So this

Bug#940595: transition: hypre

2019-09-17 Thread Drew Parsons
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: transition I'd like to proceed with the hypre transition to 2.17.0. I've tested that petsc and sundials build successfully with the new hypre. Ben file: title = "hypre"; is_affected = .depends ~

Bug#940866: nmu: ga_5.7-4

2019-09-20 Thread Drew Parsons
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: binnmu armci-mpi has been updated, so ga should be rebuilt to match (nwchem binNMU will follow after this) nmu ga_5.7-4 . ANY . unstable . -m "rebuild against armci-mpi 0.0~git20190412.643ea1a" -

Bug#941068: nmu: dolfin_2019.1.0-5

2019-09-24 Thread Drew Parsons
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: binnmu dolfin has a tight dependency on pybind11 (we were burnt in the past by mismatching pybind11 builds), so requires binNMU to update. nmu dolfin_2019.1.0-5 . ANY . unstable . -m "Rebuild again

Bug#940866: nmu: ga_5.7-4

2019-09-29 Thread Drew Parsons
On 2019-09-29 21:17, Paul Gevers wrote: Hi Drew, On 21-09-2019 06:23, Drew Parsons wrote: armci-mpi has been updated, so ga should be rebuilt to match (nwchem binNMU will follow after this) nmu ga_5.7-4 . ANY . unstable . -m "rebuild against armci-mpi 0.0~git20190412.643ea1a"

Bug#941482: nmu: nwchem_6.8.1-5

2019-10-01 Thread Drew Parsons
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: binnmu Following binNMU #940866 for ga, nwchem now needs to be rebuilt against armci-mpi 0.0~git20190412.643ea1a. As discussed in #940866 both ga and nwchem link statically against armci. nmu nwch

Bug#934630: Please fasttrack nlopt for octave transition

2019-10-04 Thread Drew Parsons
On 2019-10-04 16:19, Sébastien Villemot wrote: Dear ftpmasters, If time permits, would it be possible for you to fasttrack nlopt 2.6.1- 1 that stands in the NEW queue? The version in unstable currently fails to build and is blocking the octave transition. The version in the NEW queue should sol

Bug#940595: transition: hypre

2019-10-12 Thread Drew Parsons
On 2019-10-12 21:59, Emilio Pozuelo Monfort wrote: I'd like to proceed with the hypre transition to 2.17.0. I've tested that petsc and sundials build successfully with the new hypre. Please go ahead. Thanks Emilio. 2.18.0 is now released, and waiting now in the new queue. Perhaps we shoul

Bug#940595: transition: hypre

2019-10-12 Thread Drew Parsons
On 2019-10-12 22:19, Emilio Pozuelo Monfort wrote: Control: tags -1 - confirmed Hi Drew, On 12/10/2019 16:08, Drew Parsons wrote: On 2019-10-12 21:59, Emilio Pozuelo Monfort wrote: I'd like to proceed with the hypre transition to 2.17.0. I've tested that petsc and sund

Bug#940595: transition: hypre

2019-10-16 Thread Drew Parsons
On 2019-10-12 22:19, Emilio Pozuelo Monfort wrote: On 12/10/2019 16:08, Drew Parsons wrote: Thanks Emilio.  2.18.0 is now released, and waiting now in the new queue. Perhaps we should hold on a bit and jump straight to 2.18.0.  That will save having to process 2 transitions. What do you

Bug#940595: transition: hypre

2019-10-17 Thread Drew Parsons
Control: tags -1 - confirmed On 2019-10-17 15:23, Emilio Pozuelo Monfort wrote: Control: tags -1 confirmed On 17/10/2019 05:53, Drew Parsons wrote: On 2019-10-12 22:19, Emilio Pozuelo Monfort wrote: On 12/10/2019 16:08, Drew Parsons wrote: Thanks Emilio.  2.18.0 is now released, and

Bug#940595: transition: hypre

2019-10-18 Thread Drew Parsons
On 2019-10-18 15:56, Emilio Pozuelo Monfort wrote: On 17/10/2019 17:05, Drew Parsons wrote: Control: tags -1 - confirmed On 2019-10-17 15:23, Emilio Pozuelo Monfort wrote: Control: tags -1 confirmed On 17/10/2019 05:53, Drew Parsons wrote: On 2019-10-12 22:19, Emilio Pozuelo Monfort wrote

Bug#940595: transition: hypre

2019-10-30 Thread Drew Parsons
On 2019-10-18 15:56, Emilio Pozuelo Monfort wrote: On 17/10/2019 17:05, Drew Parsons wrote: Hi Emilio, this is rather awkward.  Hypre upstream has just released 2.18.1, so this would be the one to run the transition on. ... "The hypre team currently does nothing to ensure application b

Bug#940595: transition: hypre

2019-10-30 Thread Drew Parsons
On 2019-10-30 15:21, Drew Parsons wrote: hypre 2.18.1 is now ready in experimental. I've implemented the common libhypre option with shlibs patch-version dependency. If this approach proves problematic in practice then we can switch back to version-based library package names afterwards

Bug#940595: transition: hypre

2019-11-08 Thread Drew Parsons
On 2019-11-09 05:45, Paul Gevers wrote: Hi Drew, On 03-11-2019 21:01, Paul Gevers wrote: On 30-10-2019 08:26, Drew Parsons wrote: So yes, the unversioned libhypre package name is certainly the option that will preserve the greatest sanity (I'll proceed directly with 2.18.2 once you giv

Bug#945983: transition: petsc

2019-12-02 Thread Drew Parsons
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: transition I'd like to proceed with the PETSc 3.12 transition. The MUMPS 5.2.1 is also ready to go, but I think it might be more constructive to demonstrate via testing migration that the new petsc

Bug#945983: transition: petsc

2019-12-05 Thread Drew Parsons
On 2019-12-05 20:22, Paul Gevers wrote: Hi Drew, On 02-12-2019 09:31, Drew Parsons wrote: I'd like to proceed with the PETSc 3.12 transition. The MUMPS 5.2.1 is also ready to go, but I think it might be more constructive to demonstrate via testing migration that the new petsc is stable

Bug#945983: transition: petsc

2019-12-14 Thread Drew Parsons
On 2019-12-14 20:40, Paul Gevers wrote: On 02-12-2019 09:31, Drew Parsons wrote: I'd like to proceed with the PETSc 3.12 transition. The MUMPS 5.2.1 is also ready to go, but I think it might be more constructive to demonstrate via testing migration that the new petsc is stable with th

Bug#945983: transition: petsc

2019-12-14 Thread Drew Parsons
On 2019-12-15 17:20, Paul Gevers wrote: In that case in the spirit of a package deal, I suggest throwing in scalapack 2.1.0 as well. Go ahead. Thanks Paul, proceeding. Drew

Bug#945983: transition: petsc

2019-12-20 Thread Drew Parsons
On 2019-12-15 17:20, Paul Gevers wrote: Hi Drew, In that case in the spirit of a package deal, I suggest throwing in scalapack 2.1.0 as well. Go ahead. ga will need a binNMU for scalapack too. It gets missed in some transition lists since it provides static libraries, but it shows up in

Bug#945983: transition: petsc

2019-12-21 Thread Drew Parsons
On 2019-12-21 20:43, Paul Gevers wrote: Hi Drew, On 20-12-2019 23:56, Drew Parsons wrote: ga will need a binNMU for scalapack too. Scheduled. Well huh. The ga build failed, go figure. I'll dig into it. Thanks Paul, Drew

Bug#969635: nmu: mshr_2019.2.0~git20200213.8895485+dfsg1-2

2020-09-06 Thread Drew Parsons
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: binnmu mshr needs to be rebuild against dolfin, otherwise we get 'unknown base type "dolfin::Variable"' errors. Please binNMU mshr in unstable: nmu mshr_2019.2.0~git20200213.8895485+dfsg1-2 . ANY

Bug#971347: transition: mumps

2020-09-28 Thread Drew Parsons
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: transition I wanted to make a combo transition with superlu-dist 5.3.1 and hypre 2.20. But the hypre upgrade requires superlu-dist 5.3 and superlu-dist 5.3 FTBFS (see https://github.com/xiaoyeli/su

Bug#971347: transition: mumps

2020-09-30 Thread Drew Parsons
On 2020-09-30 17:38, Sebastian Ramacher wrote: So let's proceed with the MUMPS 5.3.3 transition on its own and get the mumps upgrade into the archives Please go ahead. Thanks Sebastian. Interestingly, upstream has just released MUMPS 5.3.4. And at the same time upstream has just confirme

Bug#971347: transition: mumps

2020-10-01 Thread Drew Parsons
Hi Alastair, I'm getting a PMIX undefined symbol in new builds of MUMPS 5.3.3 amd armel and mipsel, see https://buildd.debian.org/status/package.php?p=mumps The armel log at https://buildd.debian.org/status/fetch.php?pkg=mumps&arch=armel&ver=5.3.3-2&stamp=1601578910&raw=0 reports: ... mpifort

Bug#971347: transition: mumps

2020-10-11 Thread Drew Parsons
I uploaded petsc 3.13.6+dfsg1-1 (one of mumps' reverse dependencies) to unstable in order to clear the way for PETSc 3.14 in experimental. It built "successfully" against the old mumps on armel and mipsel but the openmpi inconsistency causes dolfin to FTBFS on these failing arches. I think p

Bug#973294: transition: scotch mumps petsc slepc

2020-10-28 Thread Drew Parsons
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: transition I had an oopsie uploading petsc4py 3.14.0-1 to unstable instead of experimental, and it got accepted immediately from the NEW queue before the message on IRC was read to reject it. I'd t

Bug#973294: transition: scotch mumps petsc slepc

2020-10-28 Thread Drew Parsons
Thanks Sebastian, proceeding. On 2020-10-28 21:29, Sebastian Ramacher wrote: Control: tags -1 + confirmed On 2020-10-28 19:54:15 +0800, Drew Parsons wrote: Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: transition I had an oopsie

Bug#973294: transition: scotch mumps petsc slepc

2020-11-09 Thread Drew Parsons
On 2020-10-28 21:29, Sebastian Ramacher wrote: Control: tags -1 + confirmed On 2020-10-28 19:54:15 +0800, Drew Parsons wrote: ... I'd therefore like to proceed with the transition of the scientific numerical library stack to get the packages back into consistent versions. The source pac

Bug#973294: transition: scotch mumps petsc slepc

2020-11-09 Thread Drew Parsons
On 2020-11-10 03:32, Adrian Bunk wrote: On Tue, Nov 10, 2020 at 01:45:04AM +0800, Drew Parsons wrote: ... You can see it got applied in the last successful mips64el build, https://buildd.debian.org/status/fetch.php?pkg=dolfin&arch=mips64el&ver=2019.2.0%7Egit20200629.946dbd3-3%2B

Bug#980043: transition: superlu-dist

2021-01-13 Thread Drew Parsons
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: transition The latest version of superlu-dist introduces a API/ABI bump (it came in superlu-dist 6.3, but we can pick it up from v6.4) The new package is currently waiting in the NEW queue aimed at

Bug#980749: nmu: slepc_3.14.1+dfsg1-1

2021-01-21 Thread Drew Parsons
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: binnmu Judging by the dolfin debci failures, slepc needs to be rebuilt. Either that, or dolfin itself needs a rebuild. Dolfin tests report: File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/_

Bug#982997: unblock: python-hdf5storage/0.1.15+git20200608.09dfc5f-2

2021-02-17 Thread Drew Parsons
upload. + * debian patch fix_dtype_random_title_1444936.patch applies +upstream commit #1444936 to fix random dtype titles used in tests. +Closes: #971806. + * Standards-Version: 4.5.1 + + -- Drew Parsons Wed, 17 Feb 2021 21:33:33 +0100 + python-hdf5storage (0.1.15+git20200608.09dfc5f-1

Bug#985228: unblock: petsc/3.14.5+dfsg1-2

2021-03-14 Thread Drew Parsons
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: unblock Please unblock package petsc [ Reason ] upstream released petsc 3.14.5 with bug fixes only. This will help improve the stability of the package over the lifetime of the bullseye release.

Bug#956590: tracker.debian.org: provide excuse for not migrating to testing

2020-04-13 Thread Drew Parsons
Control: retitle -1 release.debian.org: britney: publish a dose report for each non-migrable item On Mon, Apr 13, 2020 at 07:01:00PM +0800, Drew Parsons wrote: A current example is hdf5 1.10.6+repack-1, tracker page https://tracker.debian.org/pkg/hdf5. Listed as ready for migration for several days

Bug#961053: transition: mumps petsc slepc

2020-05-19 Thread Drew Parsons
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: transition I think the joint mumps 5.3.1 / petsc 3.13 / slepc 3.13 transition is ready to proceed. Packages seem well behaved in experimental. Auto transition trackers are already in place.

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