Hi Prakhar,
How is your effort going? Or did you give up?
Pj.
On Wed, May 19, 2010 at 10:56:52PM +0530, prakhar gaur wrote:
> We want to have a Linux distribution based on Debian, dedicated
> for Bioinformatics research which would be useful for researchers
> and students. In
I am going to ask on the EMBOSS mailing list.
Pj.
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I have an interest here, as I am mapping EMBOSS with BioLib - and
versioning plays a role.
Appears to me that supporting Embassy has less of an interest with the
core EMBOSS team. EMBOSS is changing - that is what counts. If anyone
cares to keep Embassy it would make sense to package it with an
ea
On Fri, Aug 13, 2010 at 08:14:11AM +0900, Charles Plessy wrote:
> What I am asking in option 3 is to ship EMBOSS 6.3.1 in Squeeze. Would it be
> disruptive for your work with BioLib? I am a bit shocked to read that you
> consider that option 3 (distributing EMBOSS 6.3.1 in Squeeze) is
> ???heroic?
I also enjoyed the conf. One result is a further collaboration on
EMBOSS bindings to Perl, Python, Ruby and the JVM.
> Cool - but what is rq? I can't find it in SVN nor on our tasks page.
Brilliant tool for parallelized running of programs. Like Gridengine,
or Torque, but *much* simpler to set u
The PAML description says now:
Description: Phylogenetic Analysis by Maximum Likelihood (PAML)
PAML is a package of programs for phylogenetic analyses of DNA or
protein sequences using maximum likelihood.
.
PAML is not good for tree making. It may be used to estimate parameters
and test hypot
Hi,
I updated the MrBayes package for the upcoming 3.2 release. The mb
build system migrated to autoconf and friends. The Debian package sits
in
git+ssh://pjotr-gu...@alioth.debian.org//srv/home/users/pjotr-guest/mrbayes.git
On i386 it builds without sse, which may be wanted, but I think the
I did not want to mess with the SVN repo, so I used git. When I used
the info on:
http://debian-med.alioth.debian.org/docs/policy.html#git-tips
the script
/git/debian-med/setup-repository packagename "Description of the package"
creates a repository on alioth, in my home dir, not on
git.deb
We are organising a 2 day codefest near Bergamo:
http://www.open-bio.org/wiki/EU_Codefest_2012
Registration
http://tecnoparco.org/codefest
It will be fun! Debian packagers can work together, and get others
involved. If you don't come, please pass this on to anyone interested
in hooking up
On Tue, Feb 23, 2021 at 09:28:48PM +0100, Steffen Möller wrote:
> Hello,
>
> sudo apt-get install guix
> guix install pigx-rnaseq
:)
> indeed installs the pigx-rnaseq library with its R dependencies. It
> installs it all in /gnu, which is somewhat inconvenient, as in "my root
> partition complai
The vcflib installer drops the R scripts
https://github.com/vcflib/vcflib/blob/master/CMakeLists.txt#L189
not sure you'd want those?
Pj.
On Sun, May 23, 2021 at 03:47:02PM +0200, Michael R. Crusoe wrote:
>Thanks for catching this, Steffen!
>A bug report would be appreciated, so we don
:01PM +0200, Pjotr Prins wrote:
> The vcflib installer drops the R scripts
>
> https://github.com/vcflib/vcflib/blob/master/CMakeLists.txt#L189
>
> not sure you'd want those?
>
> Pj.
>
> On Sun, May 23, 2021 at 03:47:02PM +0200, Michael R. Crusoe wrote:
> >
05.21 um 19:18 schrieb Pjotr Prins:
> > I am looking at
> >
> > https://packages.debian.org/sid/amd64/libvcflib-tools/filelist
> >
> > and the R scripts are there. I think it is strange that many tools get
> > installed in /usr/lib/vcflib/bin/ though. Is this poli
Hi Nilesh,
Sambamba co-author here.
On Wed, Jul 21, 2021 at 02:47:17AM +0530, Nilesh Patra wrote:
> Hi,
>
> It came to my notice that sambamba does not list copyright holders,
> and copyrgiht holders of several files are missing.
>
> I wonder if this is a RC bug, since I've seen a few of these
On Wed, Jul 21, 2021 at 12:23:44PM +0200, Steffen Möller wrote:
>
> Yes, please. I know we aim for all architectures, but no one runs
> sambamba on less that 64 bits, so we have not supported that.
>
>all other 64bit platforms would be fine? Like PPC64, mips64el, sparc64,
>and riscv64? Th
Dear all,
We release sambamba and freebayes with updated meson build systems. It
should work for Debian. If not I am happy to troubleshoot.
Pj.
thanks Andreas! I also bumped vcflib
https://github.com/vcflib/vcflib/releases/tag/v1.0.3
It should build as before.
On Fri, Jan 21, 2022 at 12:17:00PM +0100, Andreas Tille wrote:
> Am Fri, Jan 21, 2022 at 11:45:48AM +0100 schrieb Pjotr Prins:
> > We release sambamba and freebayes wit
I just bumped with an htslib fix:
https://github.com/vcflib/tabixpp/releases/tag/v1.1.1
If there is a problem ping me.
Pj.
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