The vcflib installer drops the R scripts https://github.com/vcflib/vcflib/blob/master/CMakeLists.txt#L189
not sure you'd want those? Pj. On Sun, May 23, 2021 at 03:47:02PM +0200, Michael R. Crusoe wrote: > Thanks for catching this, Steffen! > A bug report would be appreciated, so we don't lose track of this. > -- > Michael R. Crusoe > > On Sun, May 23, 2021, 14:51 Steffen Möller <[1]steffen_moel...@gmx.de> > wrote: > > Hello, > cudaSV needs bgziptabix to be happy, which is how I became aware fo > all > the scripts in > Med/libvcflib$ ls scripts/ > bed2region plotXPEHH.R vcfindelproximity > vcfnulldotslashdot vcfregionreduce_and_cut > bgziptabix vcf2bed.py vcfindels > vcfplotaltdiscrepancy.r vcfregionreduce_pipe > plotBfst.R vcf2sqlite.py vcfjoincalls > vcfplotaltdiscrepancy.sh vcfregionreduce_uncompressed > plotHaplotypes.R vcfbiallelic vcfmultiallelic > vcfplotsitediscrepancy.r vcfremovenonATGC > plotHapLrt.R vcfclearid vcfmultiway > vcfplottstv.sh vcfsnps > plotPfst.R vcfclearinfo vcfmultiwayscripts > vcfprintaltdiscrepancy.r vcfsort > plot_roc.r vcfcomplex vcfnobiallelicsnps > vcfprintaltdiscrepancy.sh vcf_strip_extra_headers > plotSmoothed.R vcffirstheader vcfnoindels > vcfqualfilter vcfvarstats > plotWCfst.R vcfgtcompare.sh vcfnosnps > vcfregionreduce > Med/libvcflib$ du -sh scripts/ > 399K scripts/ > being plain missing in libvcflib1 . Should there be a libvcflib-bin > package? These scripts are expected to install together with vcflib, > so > maybe having them recommended is a good idea? The vcftools package > is > something independent. > debian/rules removes *.R files, so someone on this list knows more > about > it all than me, please give some directions. > Best, > Steffen > > References > > 1. mailto:steffen_moel...@gmx.de
