[RFS] python-depinfo

Hi, I have fixed python-depinfo which reports failed tests in debci[1] to pass successfully. It builds fine in a clean chroot with passing autopkgtests. I have also updated to the next upstream release. My changes have been pushed my changes here[2]. Needs review and sponsorship. [1]:https://ci.de

[RFS] predictnls

Hi, I have fixed predictnls which reports failed tests in debci[1]. It builds fine in a clean chroot with passing autopkgtests. I have pushed my changes to the team repo, here[2]. Needs review and sponsorship. [1]:https://ci.debian.net/packages/p/predictnls/ [2]:https://salsa.debian.org/med-team/p

[RFS] art-nextgen-simulation-tools

Hi, I have fixed art-nextgen-simulation-tools failed tests in debci. It builds fine in a clean chroot, with passing autopkgtests. I have pushed my changes to team repo here[1]. Needs review and sponsorship. [1]: https://salsa.debian.org/med-team/art-nextgen-simulation-tools Thanks and regards Nil

Re: [RFS] art-nextgen-simulation-tools

On Sun, 23 Feb 2020, 13:55 Andreas Tille, wrote: > Hi Nilesh, > > On Sun, Feb 23, 2020 at 11:52:37AM +0530, Nilesh Patra wrote: > > I have fixed art-nextgen-simulation-tools failed tests in debci. > > It builds fine in a clean chroot, with passing autopkgtests. > >

Re: Using janitor-bot? (Was: libzerg | Fix debci, update package (!1))

On Wed, 4 Mar 2020, 14:16 Andreas Tille, wrote: > Hi Nilesh, > > to unhide your question from random salsa merge request I'm > forwarding it to the list. > > On Tue, Mar 03, 2020 at 11:40:59AM +, Nilesh Patra wrote: > > Nilesh Patra commented on a discussion: &

Re: Help with autopkgtest for package andi

Hi, On Sat, 7 Mar 2020, 18:38 Samyak Jain, wrote: > Heya, > > I went through the thread link on the mailing list. I went through the > thread[1] and found the link[2], which intends to upgrade the packages to > the latest upstream version and also lacks the autopkgtest. I would like to > help an

[Discussion Needed] Upstream version for pyode?

Hi, pyode is a package of Neuro-debian team, with a RC bug filed; since we are in the process of taking in a few packages(mostly with RC bugs) from neuro-debian into debian med+science, I wanted a clarification on this package. The package seems to be dead upstream with latest version being '1.2';

Re: Autopkgtest fails (Was: Kalign3)

Hi, On Fri, 20 Mar 2020, 01:20 Pranav Ballaney, wrote: > Hi Andreas, > I've added some more tests to kalign, but there's a slight problem. > As specified in the README file, kalign supports two ways of taking input: > one is through stdin and the other through the -i flag (or even without it). >

Re: Autopkgtest fails (Was: Kalign3)

On Fri, 20 Mar 2020, 01:20 Pranav Ballaney, wrote: > Hi Andreas, > I've added some more tests to kalign, but there's a slight problem. > As specified in the README file, kalign supports two ways of taking input: > one is through stdin and the other through the -i flag (or even without it). > For

Re: Autopkgtest fails (Was: Kalign3)

On Sat, 21 Mar 2020, 01:16 Pranav Ballaney, wrote: > On Fri, Mar 20, 2020 at 1:38 AM Nilesh Patra wrote: > >> Just checked. My best guess here is that -i invokes interaction, which >> won't work in a chroot. >> The best way to pass input inside a chroot is via ei

Re: COVID-19 Biohackathon April 5-11 2020

Hi, On Sun, 22 Mar 2020, 23:50 Andreas Tille, wrote: > On Tue, Mar 17, 2020 at 08:25:02AM +0100, Andreas Tille wrote: > > We now have > > > >https://blends.debian.org/med/tasks/covid-19 > > Is there any volunteer who can add more of our packages here? Steffen > was talking about lots of pac

Re: COVID-19 Biohackathon April 5-11 2020

Hi, Someone just suggested this one[1] on the JavaScript team mailing list. Looks interesting, can we add this in for the Hackathon? :) This might require version bumps, but there's probably no harm in adding it for now? [1]: https://github.com/ahmadawais/corona-cli Regards, Nilesh

Re: Droping pyqi which seemed to be needed for qiime1 only (Was: Bug#954500: pyqi: FTBFS: dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 2)

Hi On Mon, 30 Mar 2020, 17:12 Andreas Tille, wrote: > Hi, > > I fixed the actual issue in Git but got a new error: > > > ... >dh_auto_test -O--buildsystem=pybuild > I: pybuild base:217: cd > /build/pyqi-0.3.2+dfsg/.pybuild/cpython3_3.8/build; python3.8 -m unittest > discover -v > /build/pyqi

Re: [covid-19] A relevant software mentioned during today's BH meeting (consider packaging)

Hiya, On Sun, 5 Apr 2020 at 23:05, Liubov Chuprikova wrote: > Hi everyone, > > I am going to share lists of packages/workflows that were mentioned during > the "Kickoff" opening video conference today. Those are possible candidates > for us to work on or to continue working on (if already in Deb

[RFC] Update libssw? (Needed by parasail)

Hiya, The upstream of libssw has version - 1.24 [1] mentioned in their code, and it seems the haven't made the releases properly. (This is not the case with the same file in Debian though) Andreas Tille has also opened an issue about the same for making suitable releases here [2]. I'm right now t

Re: [RFC] Update libssw? (Needed by parasail)

Hi Fabian and Micheal On Fri, 10 Apr 2020, 12:35 Fabian Klötzl, wrote: > Hi, > > The error in parasail complains that some structure doesn't have a > `saturated` property. However, the libssw repository you linked to > doesn't contain that word either. Thus, the version you deleted has some > cr

Re: [RFS] Bug fixed in uc-echo

On Fri, 17 Apr 2020, 22:44 Pierre Gruet, wrote: > Dear all, > > I have prepared an upload for the package uc-echo, of which autopkgtest was > failing on arm64 due to a (by default unsigned) char type being used to > store negative integer values. > I will forward this fix to upstream. > > The pac

Re: Welcoming GSoC students

Hi On Tue, 5 May 2020, 10:34 Andreas Tille, wrote: > Hi, > > I'm hereby welcoming > > Pranav Ballaney > for the topic > Quality Assurance and Continuous Integration for Applications in Life > Sciences and Medicine. > > and > > Nilesh Pat

Re: RFS: cgview

On Sun, 10 May 2020 at 03:17, Pranav Ballaney wrote: > Hi Andreas, > > On Sun, May 10, 2020 at 1:21 AM Andreas Tille wrote: > >> Hi Pranav, >> >> On Sat, May 09, 2020 at 09:54:56PM +0530, Pranav Ballaney wrote: >> > I've added autopkgtests to cgview. Since the output is an image, I >> haven't >>

[RFS] freecontact

Hi, I have added autopkgtests for free contact, and build + tests pass in a clean chroot. I have pushed my changes to the team repo here[1]. Needs review and sponsorship. [1]: https://salsa.debian.org/med-team/freecontact Kind regards, Nilesh

[RFS] codonw

Hi, I have added autopkgtests for codonw. It builds in a clean chroot with passing tests. My changes are pushed here[1]. Needs review and sponsorship. [1]: https://salsa.debian.org/med-team/codonw Thanks and regards Nilesh

Re: Infrastructure for next Covid-19 Sprint

On Sun, 24 May 2020, 00:46 Steffen Möller, wrote: > Heya, > > I understood that it was a bit difficult with IRC to orchestrate the > participants on the last Sprint. I am not so much worried about the old > timers (not sure they need a Sprint in the first place) but the > newcomers certainly ben

[RFS] opensurgsim

Hi, opensurgsim currently FTBFS as reported in the RC bug: 960496 I have fixed this, and this now builds in a clean chroot. It however reports a lintian warning, which it reported possibly right from it's first upload: W: libopensurgsim: package-name-doesnt-match-sonames libIdentityPoseDevice0.7.0

[RFS] abacas

Hi, I have added autopkgtests for abacas. This builds in a clean chroot with passing tests. My changes have been pushed to the team repo here[1]. Needs review and sponsorship. [1]: https://salsa.debian.org/med-team/abacas Thanks and regards Nilesh

Re: [RFS] abacas

Hi, On Thu, 28 May 2020, 20:08 Andreas Tille, wrote: > Hi Nilesh, > > On Thu, May 28, 2020 at 07:39:02PM +0530, Nilesh Patra wrote: > > I have added autopkgtests for abacas. This builds in a clean chroot with > > passing tests. > > Thank you fro your prompt work on

[RFS] biomaj3-core

Hi, I've added and fixed autopkgtests in biomaj3-core. This also closes the RC bug against it: #961902. This builds fine in a clean chroot with passing tests. My changes have been pushed here [1]. Needs review and sponsorship. [1]: https://salsa.debian.org/med-team/biomaj3-core Thanks and regards

[RFS] libgff

Hi, I have added autopkgtests for libgff: it builds in a clean chroot with passing tests. My changes have been pushed to team-repo here[1]. Needs review and sponsorship. [1]: https://salsa.debian.org/med-team/libgff Regards, Nilesh

[RFS] poretools

Hi, I've added autopkgtests for poretools. In the process I realised that a circular import was causing the package to be unusable. I've fixed this, and also fixed output for "poretools times" command which was not giving the desired result. It builds in a clean chroot with passing tests and I've p

[RFS] solvate

Hi, I've added autopkgtests for solvate. It builds in a clean chroot with passing tests. My changes have been pushed to the team-repo here[1]. Needs review and sponsorship. [1]: https://salsa.debian.org/med-team/solvate Regards, Nilesh

Re: RFH: NanoSV - pkg_resources.DistributionNotFound: The 'configparser' distribution was not found and is required by NanoSV

Hi On Mon, 8 Jun 2020, 20:11 Steffen Möller, wrote: > > On 08.06.20 14:25, Andreas Tille wrote: > > On Sun, Jun 07, 2020 at 05:49:37PM +0200, Steffen Möller wrote: > >> $ NanoSV > >> Traceback (most recent call last): > >> File "/usr/bin/NanoSV", line 6, in > >> > >> raise Distributi

[RFS] mencal

Hi, I have added autopkgtests to mencal: builds in a clean chroot with passing tests. My changes have been pushed to the team repo here[1]. Needs review and sponsorship. [1]: https://salsa.debian.org/med-team/mencal Regards, Nilesh

Re: pll-modules tests failing

Hi On Tue, 9 Jun 2020, 02:58 Pranav Ballaney, wrote: > Hi, > I've committed a few changes to 2to3.patch along with a test.patch file > that I used to try and debug this. > It reports the following errors while running test/runtest.py: > > obj/binary/binary-random: error while loading shared libr

[RFS] seqtools

Hi, I have added autopkgtests to seqtools: builds in a clean chroot with passing tests. My changes have been pushed to the team repo here[1]. Needs review and sponsorship. [1]: https://salsa.debian.org/med-team/seqtools Regards, Nilesh

[RFS] gatb-core

Hi, Currently gatb-core FTBFS and has RC bug: #960414 filed against it. I've fixed it and pushed[1]. Needs review and sponsorship. [1]:https://salsa.debian.org/med-team/gatb-core Regards, Nilesh

Re: [RFS] gatb-core

Hi, On Wed, 10 Jun 2020, 23:06 Steffen Möller, wrote: > Hi Nilesh, > > On 10.06.20 17:53, Nilesh Patra wrote: > > Hi, > > Currently gatb-core FTBFS and has RC bug: #960414 filed against it. > > I've fixed it and pushed[1]. > > Needs review and sponsorship

[RFS] vsearch

Hi, I've added autopkgtests to vsearch and a few other small fixes. Builds with passing tests in a clean chroot. Needs review and sponsorship. https://salsa.debian.org/med-team/vsearch Regards, Nilesh

Re: [RFS] vsearch

Hi Andreas On Sat, 13 Jun 2020, 03:24 Andreas Tille, wrote: > Uploaded. Thanks for your work on this, Andreas. > Due to the sheer size of examples, I've made a separate binary (Since vsearch-data doesn't seem to be in NEW/debian archive I've taken a part of this) - vsearch-examples. And hence,

[RFS] readucks

Hi, I've packaged a NEW module: readucks - a Nanopore read de-multiplexer. It builds in a clean chroot with passing tests. I've pushed my changes to team-repo[1]. This needs review and sponsorship. [1]: https://salsa.debian.org/med-team/readucks Thanks and regards Nilesh

Re: [RFS] readucks

On Mon, 15 Jun 2020, 22:30 Andreas Tille, wrote: > Hi Nilesh, > > Uploaded to new and added to the new request for ftpmaster. Thanks a lot! :-) > >

[RFS] streamz

Hi, I've packaged a NEW module: streamz - Helps build pipelines to manage continuous streams of data. It builds in a clean chroot with passing tests. I've pushed my changes to team-repo[1]. *NB: The license on the repo looks like an exact copy of BSD-3-clause license. However, it has some missing

[RFS] shovill

Hi, I've packaged a NEW module: shovill - Assemble bacterial isolate genomes from Illumina paired-end reads It builds in a clean chroot. I've not added autopkgtests at the moment since some of the dependencies are still in NEW, and it would be better suited (for me) to add these once the dependenci

[RFS] yanosim

Hi, I've packaged a NEW module: shovill - Assemble bacterial isolate genomes from Illumina paired-end reads It builds in a clean chroot. There are no autopkgtests yet - since I'm not very sure of the exact data this needs. I've pushed my changes to team-repo[1]. This needs review and sponsorship.

Re: [RFS] yanosim

On Tue, 16 Jun 2020 at 21:43, Nilesh Patra wrote: > Hi, > I've packaged a NEW module: shovill - Assemble bacterial isolate genomes > from Illumina paired-end reads > OOPS!!! It's yanosim - Read simulator nanopore DRS datasets Pardon me :P It builds in a clean chroot. The

Re: Can someone else check and sponsor (Was: nanofilt ready for upload)

On Wed, 17 Jun 2020, 03:08 Shayan Doust, wrote: > Hello Andreas, > > > I've done some minor changes and was building the package. Unfortunately > > my computer crashed when ... or rather after(!) ... running the test. > I've > > seen > > > > [1] PASS > > > > on the screen and than my screen

[RFS] yanagiba

Hi, I've packaged a new module - "yanagiba". I've ensured that this looks good, and usable. Pushed to team repo here[1]. Needs review and sponsorship. [1]: https://salsa.debian.org/med-team/yanagiba Thanks and regards Nilesh

[Help needed] ont-fast5-api

Hi, I was working on packaging ont-fast5-api, and did a few workarounds (disabling tests needing sudo and copying data to .pybuild dir - weirdly enough it wasn't getting copied). The build time tests work fine, but the build fails with this weird error: dh_link -O--buildsystem=pybuild dh_str

[RFS] ngmlr

Hi, I've packaged a new module - "ngmlr". I've ensured that this looks good, and usable.Many thanks to Pranav for adding autopkgtests to this \o/ Pushed to team repo here[1].Needs review and sponsorship. [1]: https://salsa.debian.org/med-team/ngmlr Thanks and regards Nilesh

Re: RFH pychopper - test in cowbuilder does not find tests

On Thu, 18 Jun 2020 at 18:44, Steffen Möller wrote: > Hello, > > https://salsa.debian.org/med-team/pychopper > > It is a Python module with a small script to its side that is not named > pychopper - a bit surprising. More surprising, cowbuilder gives me > > writing... pychopper.1{ > cmd_listmodu

[RFS] paryfor

Hi, I've packaged a new module - "paryfor" - this is a dependency of mmmulti. I've added some workarounds - and I'm not very sure if they are fine (also added a lintian override) - but as far as I see it "works". Pushed to team repo here[1]. Needs review and sponsorship. [1]: https://salsa.debia

Re: [RFS] paryfor

The paryfor-examples package does not make sense IMHO. What we > really want to test is whether test.cpp will build on the user > machine. > > So you rather should move test.cpp to > /usr/share/doc/libparyfor-dev/examples > accompanied by a short Makefile or script that should reproduce the > pa

Re: [RFS] paryfor

Also I'm not sure if arch should be changed to 'any' here. Please check :-) On Fri, 19 Jun 2020, 14:08 Nilesh Patra, wrote: > > > The paryfor-examples package does not make sense IMHO. What we >> really want to test is whether test.cpp will build on the user &

[RFS] ncls

Please review and sponsor :) https://salsa.debian.org/med-team/ncls Regards, Nilesh

Re: [RFS] ncls

On Fri, 19 Jun 2020, 20:19 Steffen Möller, wrote: > Ooops - this is already done. > Aw, I should have been careful !! Sorry for the noise :-( > > https://salsa.debian.org/med-team/python-ncls > > https://ftp-master.debian.org/new/python-ncls_0.0+git20200225.f9894b0+ds-1.html > > :o/ Sorry.

[RFS] pyrle

Hi, I've packaged pyrle - that's a new module. I've ensured that this looks good. The repo is here[1] Needs review and sponsorship. [1]: https://salsa.debian.org/med-team/pyrle Thanks and regards Nilesh

[RFS] sorted-nearest

Hi, I've packaged sorted-nearest - that's a new module. I've ensured that this looks good. The repo is here[1] Needs review and sponsorship. [1]: https://salsa.debian.org/med-team/sorted-nearest Thanks and regards Nilesh

[Help Needed] pyranges

Hi, pyranges finally builds now with passing tests - however there are a few issues as lintian reports. Processing triggers for libc-bin (2.30-8) ... E: pyranges source: source-is-missing docs/libs/gitbook-2.6.7/js/app.min.js E: pyranges source: source-is-missing docs/libs/gitbook-2.6.7/js/lunr.js

Re: [Help Needed] pyranges

, > > On Sun, Jun 21, 2020 at 02:14:25PM +0530, Nilesh Patra wrote: > > Hi, > > pyranges finally builds now with passing tests - however there are a few > > issues as lintian reports. > > > > Processing triggers for libc-bin (2.30-8) ... > > E: pyranges sour

Re: [Help Needed] pyranges

> > Please push :-) > Done and on building w/o tests - everything clean. Now building with tests - the tests are too heavy. Shall file an ITP and send RFS when it finishes (hopefully) successfully. > >

Re: [Help Needed] pyranges

On Sun, 21 Jun 2020 at 17:43, Andreas Tille wrote: > On Sun, Jun 21, 2020 at 05:12:58PM +0530, Nilesh Patra wrote: > > > > > > Please push :-) > > > > Done and on building w/o tests - everything clean. > > Now building with tests - the tests are too hea

Re: sonLib_daemonize.py goes missing before build

On Tue, 23 Jun 2020, 20:40 Shayan Doust, wrote: > Hello, > > For now, I've just resorted to adding this python file into > missing-sources and copying it to the required directory within rules. > If it's included in the upstream branch and not in your master branch, then doing this is not correc

[Help Needed] unifrac

Hi, While trying to package unifrac - and applying a couple of patched (which is IMO, fine), I seem to get this strange error related to HDF5: h5c++ -shared -o libssu.so tree.o biom.o unifrac.o cmd.o unifrac_task.o api.o -lc -lhdf5_cpp -L/lib /usr/bin/ld: /usr/lib/x86_64-linux-gnu/hdf5/serial/libh

[RFS] seq-gen

Hi, I've added autopkgtests for seq-gen and this builds in a clean chroot with passing tests. The changes have been pushed here[1]. Needs review and sponsorship. [1]: https://salsa.debian.org/med-team/seq-gen Thanks and regards Nilesh

Re: [Help Needed] unifrac

Hi Aaron On Thu, 25 Jun 2020, 01:34 Aaron M. Ucko, wrote: > Nilesh Patra writes: > > > h5c++ -shared -o libssu.so tree.o biom.o unifrac.o cmd.o unifrac_task.o > > api.o -lc -lhdf5_cpp -L/lib > > Please try adding the h5c++ flag -shlib (which its manual page ne

Re: [RFS] seq-gen

Hi On Fri, 26 Jun 2020, 01:48 Andreas Tille, wrote: > Hi Nilesh, > > On Thu, Jun 25, 2020 at 08:38:58PM +0530, Nilesh Patra wrote: > > Hi, > > I've added autopkgtests for seq-gen and this builds in a clean chroot > with > > passing tests. > > Thanks for

Re: [RFS] seq-gen

Well the data and docs look non-free - will ask upstream. On Fri, 26 Jun 2020, 02:17 Nilesh Patra, wrote: > Hi > > On Fri, 26 Jun 2020, 01:48 Andreas Tille, wrote: > >> Hi Nilesh, >> >> On Thu, Jun 25, 2020 at 08:38:58PM +0530, Nilesh Patra wrote: >> > H

[RFS] beads

Hi, I've added autopkgtests for beads- builds with passing tests. I've pushed my changes to the team-repo[1] Needs review and sponsorship OR grant DM access: PGP key fingerprint: 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 [1]: https://salsa.debian.org/med-team/beads Thanks and regards, Nilesh

[RFS] sickle

Hi, I've added autopkgtests for beads- builds with passing tests. I've pushed my changes to the team-repo[1] Please: gbp clone --pristine-tar https://salsa.debian.org/med-team/sickle OR Grant DM access: PGP key fingerprint: 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 Thanks and regards Nilesh

[RFS] elph

Hi, I've added autopkgtests for elph- builds with passing tests. I've pushed my changes to the team-repo[1] Please: gbp clone --pristine-tar https://salsa.debian.org/med-team/elph OR Grant DM access: PGP key fingerprint: 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 Thanks and regards Nilesh

Re: [RFS] elph

On Tue, 30 Jun 2020, 20:57 Steffen Möller, wrote: > Hi, granted! Thank you :) Just uploaded. > If this package is regularly updated then, to avoid too much extra load > on https://snapshot.debian.org/, I suggest to wait for the next upstream > release, though, you decide. > As per it's relea

[RFS] pal2nal

Hi, I've added autopkgtests for pal2nal- builds with passing tests. I've pushed my changes to the team-repo[1] Please: gbp clone --pristine-tar https://salsa.debian.org/med-team/pal2nal OR Grant DM access: PGP key fingerprint: 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 Thanks and regards Nilesh

Re: EDFlib 1.18 (new version available)

On Sat, 4 Jul 2020, 13:22 Andreas Tille, wrote: > Hi Teunis, > > On Sat, Jul 04, 2020 at 06:40:51AM +, Teunis van Beelen wrote: > > EDFlib 1.18 is available at: > > > > https://www.teuniz.net/edflib/ > > Thanks for the information. > > I've included the new version into our packaging Git[1].

[RFS] mptp

Hi, I've added autopkgtests for mptp - builds with passing tests. I've pushed my changes to the team-repo[1] Please: gbp clone --pristine-tar https://salsa.debian.org/med-team/mptp OR Grant DM access: PGP key fingerprint: 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 Thanks and regards Nilesh

Re: advice for gneiss package (more specifically, its unit tests)

Hi, On Thu, 9 Jul 2020, 01:20 Shayan Doust, wrote: > Hello, > > I was planning on packaging q2-gneiss, but gneiss is a missing > dependency which I am packaging right now[1]. Right now, I care about > getting gneiss to run properly hence the incomplete package. > > During nosetest, there is only

Re: advice for gneiss package (more specifically, its unit tests)

On Thu, 9 Jul 2020, 03:15 Shayan Doust, wrote: > Hello Nilesh, > > > If it's a test-only dependency, IMO you can simply skip that particular > > test for now. > > And enable testing it when bokeh is packaged and accepted into the > archive. > > > Yeah, I'd anticipate probably not needed. > > All

Re: advice for gneiss package (more specifically, its unit tests)

On Thu, 9 Jul 2020, 05:03 Shayan Doust, wrote: > Hello Nilesh, > > > Ah, then this is being used for the data visualization part here, and is > > probably not a test-only dependency. > > I suppose the _core_ functionality (analysis) will remain unaffected, > > but the visualisation part will be u

[RFS] python-py2bit

Hi, I've added autopkgtests for python-py2bit - builds with passing tests. Also fixed the tests not running. I've pushed my changes to the team-repo[1] Please: gbp clone --pristine-tar https://salsa.debian.org/med-team/python-py2bit OR Grant DM access: PGP key fingerprint: 3E99A526F5DCC0CBBF1CEE

[RFS] cyvcf2

Hi, Currently cyvcf2 FTBFS as reported in the bug report: #964677 I've fixed this, this involved importing to a new release. I've also tested its reverse dependencies with ruby-team/meta and it looks OK : = Found reverse (bu

[RFS] patsy

Hi, Currently patsy FTBFS: as seen in RC bug:#964640 and I've fixed this. I've pushed my changes to the team-repo[1] Please: gbp clone --pristine-tar https://salsa.debian.org/med-team/patsy OR Grant DM access: PGP key fingerprint: 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 Thanks and regards Nile

[RFS] python-scitrack

Hi, I've added autopkgtests for python-scitrack - builds with passing tests. I've pushed my changes to the team-repo[1] Please: gbp clone --pristine-tar https://salsa.debian.org/med-team/python-scitrack OR Grant DM access: PGP key fingerprint: 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 Thanks and

[RFS] dwgsim

Hi, I've added autopkgtests for dwgsim - builds with passing tests. I've pushed my changes to the team-repo[1] Please: gbp clone --pristine-tar https://salsa.debian.org/med-team/dwgsim OR Grant DM access: PGP key fingerprint: 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 Thanks and regards Nilesh

Re: [RFS] dwgsim

On Tue, 14 Jul 2020, 19:12 Steffen Möller, wrote: > Allowed. > Many thanks, just got the mail now. And done dput. Kind Regards, Nilesh >

[RFS] qrisk2

Hi, I've added autopkgtests for qrisk2 - builds with passing tests. I've pushed my changes to the team-repo[1] Please: gbp clone --pristine-tar https://salsa.debian.org/med-team/qrisk2 OR Grant DM access: PGP key fingerprint: 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 Thanks and regards Nilesh

[RFS] libpll

Hi, I've added autopkgtests for libpll - builds with passing tests. I've pushed my changes to the team-repo[1] Please: gbp clone --pristine-tar https://salsa.debian.org/med-team/libpll OR Grant DM access: PGP key fingerprint: 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 Thanks and regards Nilesh

[RFS] python-biom-format

Hi, python-biom-format reports failing tests in debci: https://ci.debian.net/data/autopkgtest/unstable/amd64/p/python-biom-format/6170952/log.gz I've fixed this - builds with passing tests. I've pushed my changes to the team-repo[1] Please: gbp clone --pristine-tar https://salsa.debian.org/med-te

[RFS] python-geneimpacts

Hi, I've added autopkgtests for python-geneimpacts - builds with passing tests. I've pushed my changes to the team-repo[1] Please: gbp clone --pristine-tar https://salsa.debian.org/med-team/python-geneimpacts OR Grant DM access: PGP key fingerprint: 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 Than

[RFS] python-deeptoolsintervals

Hi, I've added autopkgtests for python-geneimpacts - builds with passing tests. I've pushed my changes to the team-repo[1] Please: gbp clone --pristine-tar https://salsa.debian.org/med-team/python-deeptoolsintervals OR Grant DM access: PGP key fingerprint: 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F

[RFS] python-xopen

Hi, I've added autopkgtests for python-xopen - builds with passing tests. I updated the package as well to new upstream version. Since this is a non-leaf package with a few important reverse dependencies, I checked that the new update of the package doesn't break anything with ruby-team/meta script

[RFS] unifrac

Hi, I had packaged unifrac a few weeks ago at the team-repo. It builds fine however I see these lintian errors which I've no idea about: E: libssu0: custom-library-search-path usr/bin/faithpd /usr/lib/x86_64-linux-gnu/hdf5/serial E: libssu0: custom-library-search-path usr/bin/ssu /usr/lib/x86_64-l

[RFS] mlv-smile

Hi, I've fixed gcc-10 FTBFS for mlv-smile as reported here in #957551. Additionally, I added in autopkgtests as well - builds with passing tests. I've pushed my changes to the team-repo[1] Please: gbp clone --pristine-tar https://salsa.debian.org/med-team/mlv-smile OR Grant DM access: PGP key fi

[RFS] prime-philo

Hi, I've fixed gcc-10 FTBFS for prime-philo as reported here in #957708. builds with passing tests. I've pushed my changes to the team-repo[1] Please: gbp clone --pristine-tar https://salsa.debian.org/med-team/prime-philo OR Grant DM access: PGP key fingerprint: 3E99A526F5DCC0CBBF1CEEA600BAE74B3

[RFS] roguenarok

Hi, I've fixed gcc-10 FTBFS for roguenarok as reported here in #957768. builds with passing tests. I've pushed my changes to the team-repo[1] Please: gbp clone --pristine-tar https://salsa.debian.org/med-team/roguenarok OR Grant DM access: PGP key fingerprint: 3E99A526F5DCC0CBBF1CEEA600BAE74B343

[RFS] seaview

Hi, I've fixed gcc-10 FTBFS for seaview as reported here in #957783. builds with passing tests. I've pushed my changes to the team-repo[1] Please: gbp clone --pristine-tar https://salsa.debian.org/med-team/seaview OR Grant DM access: PGP key fingerprint: 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1

[RFS] saint

Hi, I've fixed gcc-10 FTBFS for saint as reported here in #957772. builds with passing tests. I've pushed my changes to the team-repo[1] Please: gbp clone --pristine-tar https://salsa.debian.org/med-team/saint OR Grant DM access: PGP key fingerprint: 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 Tha

[RFS] minc-tools

Hi, I've fixed gcc-10 FTBFS for minc-tools as reported here in RC bug #957542. It now builds with passing tests. I've pushed my changes to the team-repo[1] Please: gbp clone --pristine-tar https://salsa.debian.org/med-team/minc-tools OR Grant DM access: PGP key fingerprint: 3E99A526F5DCC0CBBF1CE

[RFS] python-ncls

Hi, I've fixed autopkgtests for python-ncls. It builds with passing tests. I've pushed my changes to the team-repo[1] Please: gbp clone --pristine-tar https://salsa.debian.org/med-team/python-ncls OR Grant DM access: PGP key fingerprint: 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 Thanks and regar

Re: Request for a sponsored upload of fast5-research

On Tue, 4 Aug 2020 at 18:20, Shayan Doust wrote: > Hello Andreas, > > Thanks for the nitpicking! > > I've had a moment of inactivity with this package, so I forgot why the > patch was there. I now remember the patch I put there simply disables an > erroneous assertion: > > AssertionError: Tuples

Re: Request for a sponsored upload of fast5-research

Worth mentioning that the changes have all been made as suggested. Do > let me know if anything else remains outstanding > Looks good to me. I've done these: 1. Added Autopkgtests 2. Change archs to all instead of any 3. Run wrap-and-sort for aesthetic styling - just so that it looks sorted. Enou

[RFS] kalign

Hi, I've fixed gcc-10 FTBFS for kalign as reported here in RC bug #966865 It now builds with passing tests. I've pushed my changes to the team-repo[1] Please: gbp clone --pristine-tar https://salsa.debian.org/med-team/kalign OR Grant DM access: PGP key fingerprint: 3E99A526F5DCC0CBBF1CEEA600BAE7

[RFS] quicktree

gbp clone --pristine-tar https://salsa.debian.org/med-team/quicktree OR Grant DM access: PGP key fingerprint: 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 Regards Nilesh

[RFS] psychopy

gbp clone --pristine-tar https://salsa.debian.org/med-team/psychopy OR Grant DM access: PGP key fingerprint: 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 Thanks and Regards Nilesh

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