Re: proposed patch libbam-dev due to cufflinks configure script not picking up bam.h

2011-12-06 Thread Alex Mestiashvili
On 12/05/2011 11:50 PM, Charles Plessy wrote: > Le Mon, Dec 05, 2011 at 03:52:12PM +0100, Alex Mestiashvili a écrit : > >> >> I stuck trying to find a contact of locfit's author , (locfit is the >> part of cufflinks). >> The license of locfit forbids benchmarking so it is not free . >> Should

Re: proposed patch libbam-dev due to cufflinks configure script not picking up bam.h

2011-12-05 Thread Charles Plessy
Le Mon, Dec 05, 2011 at 03:52:12PM +0100, Alex Mestiashvili a écrit : > > I stuck trying to find a contact of locfit's author , (locfit is the > part of cufflinks). > The license of locfit forbids benchmarking so it is not free . > Should we go for non-free section in such case ? Hi all, I fou

Re: proposed patch libbam-dev due to cufflinks configure script not picking up bam.h

2011-12-05 Thread Alex Mestiashvili
On 12/05/2011 04:19 PM, Peter Cock wrote: > On Mon, Dec 5, 2011 at 2:52 PM, Alex Mestiashvili > wrote: > >> I stuck trying to find a contact of locfit's author , (locfit is the >> part of cufflinks). >> The license of locfit forbids benchmarking so it is not free . >> Should we go for non-free

Re: proposed patch libbam-dev due to cufflinks configure script not picking up bam.h

2011-12-05 Thread Peter Cock
On Mon, Dec 5, 2011 at 2:52 PM, Alex Mestiashvili wrote: > > I stuck trying to find a contact of locfit's author , (locfit is the > part of cufflinks). > The license of locfit forbids benchmarking so it is not free . > Should we go for non-free section in such case ? > > Best regards , > Alex Doe

Re: proposed patch libbam-dev due to cufflinks configure script not picking up bam.h

2011-12-05 Thread Alex Mestiashvili
On 12/04/2011 10:12 PM, Andreas Tille wrote: > On Sun, Dec 04, 2011 at 03:19:14PM +0100, Alexander Mestiashvili wrote: > >> I think I've found the proper dh_helper - dh_autoreconf . >> see git for changes . >> > Looks very reasonable (even if I did not tested the build). Do you > regard i

Re: proposed patch libbam-dev due to cufflinks configure script not picking up bam.h

2011-12-04 Thread Andreas Tille
On Sun, Dec 04, 2011 at 03:19:14PM +0100, Alexander Mestiashvili wrote: > I think I've found the proper dh_helper - dh_autoreconf . > see git for changes . Looks very reasonable (even if I did not tested the build). Do you regard it ready for sponsering? Kind regards Andreas. -- ht

Re: proposed patch libbam-dev due to cufflinks configure script not picking up bam.h

2011-12-04 Thread Alexander Mestiashvili
On 12/04/2011 12:39 AM, Andreas Tille wrote: > On Sat, Dec 03, 2011 at 06:43:50PM +0100, Andreas Tille wrote: > >>> Does anybody know how to avoid this ? >>> >> I gave it a quick(!) try (see git) but failed. I'd suggest asking on >> debian-ment...@lists.debian.org because there are peopl

Re: proposed patch libbam-dev due to cufflinks configure script not picking up bam.h

2011-12-04 Thread Alex Mestiashvili
On 12/04/2011 12:39 AM, Andreas Tille wrote: > On Sat, Dec 03, 2011 at 06:43:50PM +0100, Andreas Tille wrote: > >>> Does anybody know how to avoid this ? >>> >> I gave it a quick(!) try (see git) but failed. I'd suggest asking on >> debian-ment...@lists.debian.org because there are peopl

Re: proposed patch libbam-dev due to cufflinks configure script not picking up bam.h

2011-12-03 Thread Andreas Tille
On Sat, Dec 03, 2011 at 06:43:50PM +0100, Andreas Tille wrote: > > Does anybody know how to avoid this ? > > I gave it a quick(!) try (see git) but failed. I'd suggest asking on > debian-ment...@lists.debian.org because there are people with a lot of > experience (gaining it yourself will take yo

Re: proposed patch libbam-dev due to cufflinks configure script not picking up bam.h

2011-12-03 Thread Andreas Tille
Hi Alex, On Fri, Dec 02, 2011 at 11:17:03PM +0100, Alex Mestiashvili wrote: > Hello , I've imported a new version to the git repository : > > http://anonscm.debian.org/gitweb/?p=debian-med/cufflinks.git > > the problem is that I can build source only one time , next time > dpkg-source realizes t

Re: proposed patch libbam-dev due to cufflinks configure script not picking up bam.h

2011-12-02 Thread Alex Mestiashvili
On 12/02/2011 03:32 PM, Andreas Tille wrote: > Hi George, > > I admit I do not completely understand what you are suggesting but it > feels somehow hackish. I'd strongly advise to talk to Alexander and > Charles who both rook part in the discussion in the cufflinks ITP > (#627799) and have commite

Re: proposed patch libbam-dev due to cufflinks configure script not picking up bam.h

2011-12-02 Thread Andreas Tille
Hi George, I admit I do not completely understand what you are suggesting but it feels somehow hackish. I'd strongly advise to talk to Alexander and Charles who both rook part in the discussion in the cufflinks ITP (#627799) and have commited to packaging in Debian Med Git. Kind regards