Hi George,
I admit I do not completely understand what you are suggesting but it
feels somehow hackish. I'd strongly advise to talk to Alexander and
Charles who both rook part in the discussion in the cufflinks ITP
(#627799) and have commited to packaging in Debian Med Git.
Kind regards
Andreas.
On Fri, Dec 02, 2011 at 02:00:24AM +0300, George Marselis wrote:
> *head-to-desk*
>
> so, i was trying to compile the latest version of cufflinks. it would
> simply not budge: kept tripping over not finding bam.h . The culpit is
> ax_bam.m4 : it is trying to find @%:@include <bam/bam.h> (line 105)
> my solution was to ln -s /usr/include/samtools /usr/linclude/bam .
> worked just fine.
>
> i see that in
> http://sourceforge.net/mailarchive/forum.php?thread_name=20110104103405.GB28632%40sanger.ac.uk&forum_name=samtools-devel
> there was a discussion going on from dec 2010 till may 2011, but it
> does not look that anything came out of that. would incorporating the
> softlink into libbam-dev be an acceptable solution till i finally
> finish the autotools book and submit a patch to upsteam?
>
> thank you,
>
> george marselis
>
>
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