Re: GMAP -- Align mRNA and EST sequences to a genome

2010-05-16 Thread Andreas Tille
On Wed, May 12, 2010 at 02:01:08PM +0900, Charles Plessy wrote: > > I had changed the upstream version number from > > gmap-2010-03-09 > > to > > gmap-20100309 > > > > This change isn't strictly necessary. Should I undo this? > > I would recommend to use the same version number as Upstream when p

Re: License for debian packaging of non-free works (Re: GMAP -- Align mRNA and EST sequences to a genome).

2010-05-16 Thread Andreas Tille
Hi Charles On Wed, May 12, 2010 at 11:47:41AM +0900, Charles Plessy wrote: > More recently, I have used a more fancy license to indicate my intention > to have my work treated as if it were in the public domain: > http://blitiri.com.ar/p/bola/ > > However, I understand that one may prefer a more

Re: GMAP -- Align mRNA and EST sequences to a genome

2010-05-12 Thread Shaun Jackman
On 12 May 2010 16:26, Charles Plessy wrote: > Le Wed, May 12, 2010 at 11:14:40AM -0700, Shaun Jackman a écrit : >> On 11 May 2010 22:01, Charles Plessy wrote: >> ... >> > Please consider adding a ‘pristine-tar’ branch if it is easy for you. >> > http://wiki.debian.org/PackagingWithGit#pristine-ta

Re: GMAP -- Align mRNA and EST sequences to a genome

2010-05-12 Thread Charles Plessy
Le Wed, May 12, 2010 at 11:14:40AM -0700, Shaun Jackman a écrit : > On 11 May 2010 22:01, Charles Plessy wrote: > ... > > Please consider adding a ‘pristine-tar’ branch if it is easy for you. > > http://wiki.debian.org/PackagingWithGit#pristine-tar > > Since the pristine tar can be downloaded fro

Re: GMAP -- Align mRNA and EST sequences to a genome

2010-05-12 Thread Shaun Jackman
Hi Charles, On 11 May 2010 22:01, Charles Plessy wrote: ... > Please consider adding a ‘pristine-tar’ branch if it is easy for you. > http://wiki.debian.org/PackagingWithGit#pristine-tar Since the pristine tar can be downloaded from either the upstream site or from ftp.debian.org, it seems redun

Re: GMAP -- Align mRNA and EST sequences to a genome

2010-05-11 Thread Charles Plessy
Hi Shaun, here are extra comments en vrac: Le Mon, May 10, 2010 at 05:31:12PM -0700, Shaun Jackman a écrit : > >> > >> The git repository is here: > >> git://git.debian.org/git/debian-med/gmap.git > >> http://git.debian.org/?p=debian-med/gmap.git Please consider adding a ‘pristine-tar’ branch if

License for debian packaging of non-free works (Re: GMAP -- Align mRNA and EST sequences to a genome).

2010-05-11 Thread Charles Plessy
Le Tue, May 11, 2010 at 08:32:28AM +0200, Andreas Tille a écrit : > On Mon, May 10, 2010 at 05:31:12PM -0700, Shaun Jackman wrote: > > > Since this license is not compatible with > > >   the GPL, I recommend that you chose another license for your packaging > > > work, in > > >   order to avoid he

Re: GMAP -- Align mRNA and EST sequences to a genome

2010-05-11 Thread Shaun Jackman
Hi Andreas, I've pushed my changes into the git repository. Can you look it over? If it looks good, I'll upload the package. I had changed the upstream version number from gmap-2010-03-09 to gmap-20100309 This change isn't strictly necessary. Should I undo this? Cheers, Shaun On 11 May 2010 11

Re: GMAP -- Align mRNA and EST sequences to a genome

2010-05-11 Thread Shaun Jackman
On 10 May 2010 23:32, Andreas Tille wrote: > On Mon, May 10, 2010 at 05:31:12PM -0700, Shaun Jackman wrote: >> > Since this license is not compatible with >> >   the GPL, I recommend that you chose another license for your packaging >> > work, in >> >   order to avoid headaches in the future. >>

Re: GMAP -- Align mRNA and EST sequences to a genome

2010-05-10 Thread Andreas Tille
On Mon, May 10, 2010 at 05:31:12PM -0700, Shaun Jackman wrote: > > Since this license is not compatible with > >   the GPL, I recommend that you chose another license for your packaging > > work, in > >   order to avoid headaches in the future. > > Can you recommend a license that is DFSG free an

Re: GMAP -- Align mRNA and EST sequences to a genome

2010-05-10 Thread Shaun Jackman
Hi Charles, On 4 May 2010 21:01, Charles Plessy wrote: > Le Tue, May 04, 2010 at 06:30:26PM -0700, Shaun Jackman a écrit : >> >> I've packaged GMAP: >> Align mRNA and EST sequences to a genome >>  GMAP: Genomic Mapping and Alignment Program >>  GSNAP: Genomic Short-read Nucleotide Alignment Progr

Re: GMAP -- Align mRNA and EST sequences to a genome

2010-05-04 Thread Charles Plessy
Le Tue, May 04, 2010 at 06:30:26PM -0700, Shaun Jackman a écrit : > > I've packaged GMAP: > Align mRNA and EST sequences to a genome > GMAP: Genomic Mapping and Alignment Program > GSNAP: Genomic Short-read Nucleotide Alignment Program > > The ITP is here: > http://bugs.debian.org/580277 > > T