On Mon, May 10, 2010 at 05:31:12PM -0700, Shaun Jackman wrote: > > Since this license is not compatible with > > the GPL, I recommend that you chose another license for your packaging > > work, in > > order to avoid headaches in the future. > > Can you recommend a license that is DFSG free and compatible with the > upstream license?
I'm quite frequently using: Files: debian/* License: Same as <program name> (in case it <program has a DFSG free license). Otherwise in most cases BSD license will fit. > The default location can be overridden by a command line option (-D) > or an environment variable (GMAPDB). > > How about /var/cache/gmap? > http://www.pathname.com/fhs/pub/fhs-2.3.html#VARCACHEAPPLICATIONCACHEDATA Sounds good. I'd recommend a wrapper around gmap which explicitely makes use of this option. > I edited and reformatted your description. How's this look? > > Description: spliced and SNP-tolerant alignment for mRNA and short reads > This package contains the programs GMAP and GSNAP as well as > utilities to manage genome databases in GMAP/GSNAP format. > GMAP (Genomic Mapping and Alignment Program) is a tool for aligning > EST, mRNA and cDNA sequences. > GSNAP (Genomic Short-read Nucleotide Alignment Program) is a tool for > aligning single and paired-end transcriptome reads. > Both tools can use a database of > * known splice sites and identify novel splice sites. > * known single nucleotide polymorphisms (SNPs). > GSNAP can align bisulfite-treated DNA. Please mind the spacing! I guess the lines with " * known" in the beginning need an additional blank in front to make sure it is a correct itemizing. Also last line needs a space in front. Thanks for working on this Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20100511063228.ga13...@an3as.eu
