On 10 May 2010 23:32, Andreas Tille <andr...@an3as.eu> wrote: > On Mon, May 10, 2010 at 05:31:12PM -0700, Shaun Jackman wrote: >> > Since this license is not compatible with >> > the GPL, I recommend that you chose another license for your packaging >> > work, in >> > order to avoid headaches in the future. >> >> Can you recommend a license that is DFSG free and compatible with the >> upstream license? > > I'm quite frequently using: > > Files: debian/* > License: Same as <program name> > > (in case it <program has a DFSG free license). Otherwise in most cases > BSD license will fit.
I'll use the BSD license. Files: debian/* Copyright: 2010 Shaun Jackman <sjack...@debian.org> License: BSD See `/usr/share/common-licenses/BSD'. >> The default location can be overridden by a command line option (-D) >> or an environment variable (GMAPDB). >> >> How about /var/cache/gmap? >> http://www.pathname.com/fhs/pub/fhs-2.3.html#VARCACHEAPPLICATIONCACHEDATA > > Sounds good. I'd recommend a wrapper around gmap which explicitely > makes use of this option. I'll configure gmap at compile time for the default DB directory to be /var/cache/gmap: override_dh_auto_configure: dh_auto_configure -- --with-gmapdb=/var/cache/gmap >> I edited and reformatted your description. How's this look? >> >> Description: spliced and SNP-tolerant alignment for mRNA and short reads >> This package contains the programs GMAP and GSNAP as well as >> utilities to manage genome databases in GMAP/GSNAP format. >> GMAP (Genomic Mapping and Alignment Program) is a tool for aligning >> EST, mRNA and cDNA sequences. >> GSNAP (Genomic Short-read Nucleotide Alignment Program) is a tool for >> aligning single and paired-end transcriptome reads. >> Both tools can use a database of >> * known splice sites and identify novel splice sites. >> * known single nucleotide polymorphisms (SNPs). >> GSNAP can align bisulfite-treated DNA. > > Please mind the spacing! I guess the lines with " * known" in the beginning > need an additional blank in front to make sure it is a correct itemizing. > Also last line needs a space in front. Noted. > Thanks for working on this No problem at all. Thanks for the help! Cheers, Shaun -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/aanlktikwd4e2thsdnerirwdhkhhuval55w56ozg_v...@mail.gmail.com
